CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY34252
CDY38318
CDY46317

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	CDY34252	AT3G22440.1	15714319
AT2G04400.1	CDY38318	AT3G22440.1	15714319
AT2G04400.1	CDY46317	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43301	Canola	plastid	61.35	78.01
CDY66247	Canola	plastid	59.73	54.98
CDY15081	Canola	plastid	58.65	54.11
CDY00859	Canola	mitochondrion	15.95	53.64
AT2G04400.1	Thale cress	plastid	52.97	48.76
VIT_12s0057g01240.t01	Wine grape	cytosol	38.38	39.12
CDY00860	Canola	cytosol	10.0	38.95
KRH14867	Soybean	nucleus, plastid	37.57	35.46
KRH73214	Soybean	nucleus, plastid	37.3	35.11
Os08t0320400-01	Rice	plastid	21.35	34.2
PGSC0003DMT400039190	Potato	plastid	36.76	33.09
Solyc03g111850.2.1	Tomato	plastid	36.49	32.85
TraesCS7A01G512300.1	Wheat	cytosol	28.11	31.61
CDX94822	Canola	plastid	14.86	31.61
GSMUA_Achr3P04280_001	Banana	plastid	33.51	31.16
GSMUA_Achr3P12080_001	Banana	plastid	32.7	30.87
TraesCS7D01G501700.1	Wheat	plastid	29.73	30.64
Zm00001d025652_P005	Maize	mitochondrion, plastid	34.32	30.46
EES12321	Sorghum	plastid	34.32	30.09
HORVU7Hr1G114660.3	Barley	mitochondrion	28.38	29.75
TraesCS7B01G423900.1	Wheat	plastid	30.27	29.63
HORVU2Hr1G081460.2	Barley	plastid	32.43	29.2
TraesCS5A01G169500.1	Wheat	plastid	29.19	28.65
TraesCS5D01G173900.1	Wheat	plastid	29.19	28.65
HORVU5Hr1G052150.3	Barley	plastid	29.19	28.65
TraesCS2B01G348500.1	Wheat	plastid	31.62	28.61
TraesCS2D01G329500.1	Wheat	plastid	31.62	28.4
TraesCS5B01G166300.1	Wheat	plastid	28.92	28.38
TraesCS2A01G335200.1	Wheat	plastid	31.62	28.33
Zm00001d024393_P001	Maize	plastid	29.19	28.2
TraesCS3D01G285000.1	Wheat	cytosol	17.84	27.16
CDX86321	Canola	plastid	36.49	27.05
Os09t0255400-02	Rice	plastid	28.11	27.01
EES14765	Sorghum	plastid	27.57	26.7
EES05044	Sorghum	plastid	27.3	26.58
Zm00001d020008_P001	Maize	plastid	27.84	26.48
CDX85318	Canola	plastid	37.03	26.35
OQU89210	Sorghum	plastid	28.38	26.05

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	GO:A0A078FSE4	UniProt:A0A078FSE4	InterPro:Aldolase_TIM
EnsemblPlants:CDY17450	ProteinID:CDY17450	ProteinID:CDY17450.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425
GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00095613001	InterPro:IPR013785	InterPro:Indole-3-glycerol_P_synth	PFAM:PF00218
PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00035	UniParc:UPI0004EE00F2
SEG:seg	:	:	:	:	:

Description

BnaC09g20870DBnaC09g20870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSE4]

Coordinates

chrLK032073:+:582192..584204

Molecular Weight (calculated)

41477.7 Da

IEP (calculated)

6.429

GRAVY (calculated)

-0.253

Length

370 amino acids

Sequence
(BLAST)

001: MEGLFPVQSA GQRLISPSLY RCIGSVSIRR SVTGFSMDTR ISSRSPSQFT IRSQQVLTSS SVENDVRIKE WEVDMYQNEL AISKGIRIRR KPPSIGPLGY
101: SGPFELRLLN GQVADSPSNI LEEITWYKEQ EVSRMKELNP LEALKKAVEN APPIRDFVGA LRLAHHRTSF PALIAEVEIA QAYERGGAAF LSVLTDQKYF
201: KVSLVVNKKC WCKDPWQMIY YDRTKGADAV LLIAAILTDL EITFLLKLSK KLGLAALVES IVKQNDPEKG IAGLFGRTLQ KTFPRNMVEA GLTVDMGTAV
301: HWFKCLCKIE GSGGELTETL QKMFPCDWSL HHHHHHRFLD QVSDVDSEED DDGEDNDDDV NVVSGFLSSK

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.