Factsheet for Solyc03g111850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g076050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	Solyc09g076050.2.1	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039190	Potato	plastid	87.1	87.1
VIT_12s0057g01240.t01	Wine grape	cytosol	67.15	76.03
KRH14867	Soybean	nucleus, plastid	65.45	68.62
AT5G48220.1	Thale cress	plastid	62.04	67.28
KRH73214	Soybean	nucleus, plastid	64.23	67.18
Bra037502.1-P	Field mustard	plastid	62.29	67.02
GSMUA_Achr3P04280_001	Banana	plastid	61.07	63.07
TraesCS7A01G512300.1	Wheat	cytosol	49.88	62.31
AT2G04400.1	Thale cress	plastid	60.58	61.94
CDY66247	Canola	plastid	59.61	60.95
Bra013209.1-P	Field mustard	plastid	59.37	60.7
CDY15081	Canola	plastid	59.12	60.6
Zm00001d025652_P005	Maize	mitochondrion, plastid	61.07	60.19
HORVU7Hr1G114660.3	Barley	mitochondrion	51.09	59.49
GSMUA_Achr3P12080_001	Banana	plastid	56.2	58.93
TraesCS2B01G348500.1	Wheat	plastid	58.39	58.68
HORVU2Hr1G081460.2	Barley	plastid	58.64	58.64
EES12321	Sorghum	plastid	60.1	58.53
TraesCS2D01G329500.1	Wheat	plastid	57.91	57.77
HORVU5Hr1G052150.3	Barley	plastid	52.8	57.56
TraesCS5D01G173900.1	Wheat	plastid	52.8	57.56
TraesCS5A01G169500.1	Wheat	plastid	52.8	57.56
TraesCS2A01G335200.1	Wheat	plastid	57.66	57.38
TraesCS5B01G166300.1	Wheat	plastid	52.55	57.29
EES05044	Sorghum	plastid	52.31	56.58
EES14765	Sorghum	plastid	52.55	56.54
Zm00001d024393_P001	Maize	plastid	52.07	55.87
Os09t0255400-02	Rice	plastid	51.09	54.55
TraesCS7B01G423900.1	Wheat	plastid	50.12	54.5
OQU89210	Sorghum	plastid	52.55	53.6
Zm00001d020008_P001	Maize	plastid	50.61	53.47
TraesCS7D01G501700.1	Wheat	plastid	46.23	52.92
CDX86321	Canola	plastid	62.29	51.3
CDY00860	Canola	cytosol	11.68	50.53
CDX85318	Canola	plastid	61.8	48.85
CDY43301	Canola	plastid	34.55	48.8
TraesCS3D01G285000.1	Wheat	cytosol	26.28	44.44
Os08t0320400-01	Rice	plastid	22.63	40.26
CDX94822	Canola	plastid	17.03	40.23
CDY17450	Canola	plastid	32.85	36.49

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785
InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	UniProt:K4BK46	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614
PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	EnsemblPlantsGene:Solyc03g111850.2	EnsemblPlants:Solyc03g111850.2.1
UniParc:UPI00027692DF	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:62457842..62463442

Molecular Weight (calculated)

45397.1 Da

IEP (calculated)

8.180

GRAVY (calculated)

-0.125

Length

411 amino acids

Sequence
(BLAST)

001: MDSVMPLRTT TAATATAASA AATVRPRFSF QLLANPRPRK PAFSLSVPTT IFTTHRARIL PQFTPVRAQE DNSALVSEST IPEGDALKIK EWEVERFQDE
101: IAASQGIKIR RRPTTGPPLH YVGPFEFRMQ NEGNTPINIL EEIIWYKDKE VSQMKEKKPL LLLKKLLSSV PPTRDFLGAL RESYSRTGLP ALIAEVKKAS
201: PSRGVLRENF NPVEIAKAYE RGGAACLSVL TDQKYFQGSF ENLEAIRNAG VECPLLCKEF VIEAWQIYYA RVKGADAILL IAAVLPNLDI QYMIKICKLL
301: GLTALVEVHD EREMDRVLGI DGVELIGINN RDLGTFKVDI SNTKKLLEGE RGERIREKGI IVVGESGLFT PADIGYVQEA GVKAVLVGES LVKQEDPAKG
401: ISGLFGKDIS C

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.