Factsheet for TraesCS2A01G335200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G434500.1
TraesCS5B01G437500.2
TraesCS5D01G442300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	TraesCS5A01G434500.1	AT3G22440.1	15714319
AT2G04400.1	TraesCS5B01G437500.2	AT3G22440.1	15714319
AT2G04400.1	TraesCS5D01G442300.1	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G329500.1	Wheat	plastid	93.22	93.45
TraesCS2B01G348500.1	Wheat	plastid	92.49	93.4
HORVU2Hr1G081460.2	Barley	plastid	87.41	87.83
Zm00001d025652_P005	Maize	mitochondrion, plastid	71.43	70.74
EES12321	Sorghum	plastid	70.94	69.43
VIT_12s0057g01240.t01	Wine grape	cytosol	58.6	66.67
TraesCS3D01G285000.1	Wheat	cytosol	37.29	63.37
GSMUA_Achr3P04280_001	Banana	plastid	60.29	62.56
AT5G48220.1	Thale cress	plastid	56.9	62.01
KRH14867	Soybean	nucleus, plastid	58.6	61.73
Bra037502.1-P	Field mustard	plastid	56.66	61.26
KRH73214	Soybean	nucleus, plastid	57.63	60.56
TraesCS7A01G512300.1	Wheat	cytosol	48.18	60.49
PGSC0003DMT400039190	Potato	plastid	58.11	58.39
Solyc03g111850.2.1	Tomato	plastid	57.38	57.66
TraesCS5A01G169500.1	Wheat	plastid	51.57	56.5
AT2G04400.1	Thale cress	plastid	52.78	54.23
Bra013209.1-P	Field mustard	plastid	51.82	53.23
CDY15081	Canola	plastid	51.57	53.12
CDY66247	Canola	plastid	51.57	52.99
CDX86321	Canola	plastid	56.42	46.69
CDY00860	Canola	cytosol	10.65	46.32
CDX85318	Canola	plastid	56.9	45.19
CDY43301	Canola	plastid	29.3	41.58
CDX94822	Canola	plastid	15.74	37.36
CDY17450	Canola	plastid	28.33	31.62

Protein Annotations

EnsemblPlants:TraesCS2A01G335200.1	EnsemblPlantsGene:TraesCS2A01G335200	Gene3D:3.20.20.70	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425
GO:GO:0008150	GO:GO:0008152	HAMAP:MF_00134_B	InterPro:Aldolase_TIM	InterPro:IPR013785	InterPro:Indole-3-glycerol_P_synth
InterPro:RibuloseP-bd_barrel	KEGG:00400+4.1.1.48	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	PFAM:PF00218	SEG:seg
SUPFAM:SSF51366	TIGR:cd00331	MapMan:4.1.5.3.4	:	:	:

Description

No Description!

Coordinates

chr2A:-:569205872..569209408

Molecular Weight (calculated)

44558.8 Da

IEP (calculated)

7.091

GRAVY (calculated)

-0.107

Length

413 amino acids

Sequence
(BLAST)

001: MEALATAPAP SRPGPPPPTR CSHLRRPKAL ATSKLPRRVI AALHMDGPRA APLRCTPAET DAVATTSDQT ETAAAVEATE LGNNGAPAPA ADAPAASIEG
101: LDGIKIRRRP VTGPSVHHVG PFQFRLENEG NTPRNILEKI VWNKDVEIWQ MKEKMPLYRL KGPLDNAPPA RDFVAALKAS YDRTALPALI AEVKKGSPSR
201: GVLRENFEPV EIAQAYEKNG AACLSVLTDS KFFQGSFDYL EAIRNAGVKC PLLCKEFIID AWQLYYARSK GADAVLLIAA ILPDRDISYM LKICKILGMA
301: ALVEVHDERE IDRVIGIAGI QLIGINNRNL ETFEVDISNT KKLLEGERGQ LIAQKDIIVV GESGLFTPDH VSFVQDAGVK AILVGESLIK QEDPGKAIAG
401: LFGKDISPVS SAV

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.