Factsheet for TraesCS3D01G285000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G434500.1
TraesCS5B01G437500.2
TraesCS5D01G442300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	TraesCS5A01G434500.1	AT3G22440.1	15714319
AT2G04400.1	TraesCS5B01G437500.2	AT3G22440.1	15714319
AT2G04400.1	TraesCS5D01G442300.1	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00860	Canola	cytosol	16.87	43.16
TraesCS2B01G348500.1	Wheat	plastid	71.19	42.3
TraesCS2D01G329500.1	Wheat	plastid	65.84	38.84
TraesCS2A01G335200.1	Wheat	plastid	63.37	37.29
HORVU2Hr1G081460.2	Barley	plastid	56.79	33.58
Zm00001d025652_P005	Maize	mitochondrion, plastid	53.09	30.94
EES12321	Sorghum	plastid	53.5	30.81
VIT_12s0057g01240.t01	Wine grape	cytosol	44.03	29.48
CDY43301	Canola	plastid	32.92	27.49
GSMUA_Achr3P04280_001	Banana	plastid	44.86	27.39
KRH14867	Soybean	nucleus, plastid	42.8	26.53
AT5G48220.1	Thale cress	plastid	41.15	26.39
Solyc03g111850.2.1	Tomato	plastid	44.44	26.28
KRH73214	Soybean	nucleus, plastid	42.39	26.21
Bra037502.1-P	Field mustard	plastid	41.15	26.18
PGSC0003DMT400039190	Potato	plastid	44.03	26.03
TraesCS7D01G501700.1	Wheat	plastid	35.39	23.96
TraesCS5D01G173900.1	Wheat	plastid	37.04	23.87
AT2G04400.1	Thale cress	plastid	37.86	22.89
CDY66247	Canola	plastid	35.39	21.39
Bra013209.1-P	Field mustard	plastid	35.39	21.39
CDY15081	Canola	plastid	34.98	21.2
CDX86321	Canola	plastid	41.15	20.04
CDX85318	Canola	plastid	39.92	18.65
CDY17450	Canola	plastid	27.16	17.84
CDX94822	Canola	plastid	8.64	12.07

Protein Annotations

EnsemblPlants:TraesCS3D01G285000.1	EnsemblPlantsGene:TraesCS3D01G285000	Gene3D:3.20.20.70	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:Aldolase_TIM	InterPro:IPR013785
InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	InterPro:RibuloseP-bd_barrel	KEGG:00400+4.1.1.48	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10
PFAM:PF00218	ScanProsite:PS00614	SEG:seg	SUPFAM:SSF51366	MapMan:4.1.5.3.4	:

Description

No Description!

Coordinates

chr3D:+:394570368..394571749

Molecular Weight (calculated)

26465.7 Da

IEP (calculated)

7.995

GRAVY (calculated)

-0.113

Length

243 amino acids

Sequence
(BLAST)

001: MDGACAAPLC CTPAETDAAA TTSDQTETVV EATEQGNNGA PAADAPAASI EGLDGIKIRR RPVTGPSGHH VGPFQFRLEN VGNTPRNILE KIVWNKDVEI
101: WQVRCHSGLP EHCGALCNVT FHSCDTKLVF WLISVRQMKE KMPLYRLKGL LDNAPPARDF VAALKASYDR TAVPALIAEV KKASPSQGVL RKNFDPVEIA
201: QAYEKNGAAC LKFFQVNSFF SRRFGSLFSY AVELSVPKIL GFL

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.