Factsheet for Zm00001d025652_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007835_P002
Zm00001d018911_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	Zm00001d007835_P002	AT3G22440.1	15714319
AT2G04400.1	Zm00001d018911_P001	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12321	Sorghum	plastid	87.77	86.73
TraesCS2B01G348500.1	Wheat	plastid	71.94	73.35
TraesCS2D01G329500.1	Wheat	plastid	72.18	73.06
HORVU2Hr1G081460.2	Barley	plastid	70.5	71.53
TraesCS2A01G335200.1	Wheat	plastid	70.74	71.43
VIT_12s0057g01240.t01	Wine grape	cytosol	59.71	68.59
GSMUA_Achr3P04280_001	Banana	plastid	62.83	65.83
Bra037502.1-P	Field mustard	plastid	59.71	65.18
AT5G48220.1	Thale cress	plastid	58.99	64.91
KRH14867	Soybean	nucleus, plastid	60.67	64.54
KRH73214	Soybean	nucleus, plastid	60.67	64.38
Solyc03g111850.2.1	Tomato	plastid	60.19	61.07
PGSC0003DMT400039190	Potato	plastid	60.19	61.07
AT2G04400.1	Thale cress	plastid	56.59	58.71
Bra013209.1-P	Field mustard	plastid	54.68	56.72
CDY66247	Canola	plastid	54.44	56.47
CDY15081	Canola	plastid	53.96	56.11
Zm00001d024393_P001	Maize	plastid	51.08	55.61
Zm00001d020008_P001	Maize	plastid	50.6	54.24
TraesCS3D01G285000.1	Wheat	cytosol	30.94	53.09
CDX86321	Canola	plastid	58.99	49.3
CDY00860	Canola	cytosol	11.03	48.42
CDX85318	Canola	plastid	59.71	47.88
CDY43301	Canola	plastid	29.98	42.96
CDX94822	Canola	plastid	17.03	40.8
CDY17450	Canola	plastid	30.46	34.32

Protein Annotations

KEGG:00400+4.1.1.48	EntrezGene:100274566	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	ProteinID:AQK44171.1	InterPro:Aldolase_TIM
EMBL:BT067524	UniProt:C0PGV5	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth
HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	UniParc:UPI000195CA87	EnsemblPlantsGene:Zm00001d025652	EnsemblPlants:Zm00001d025652_P005	EnsemblPlants:Zm00001d025652_T005	SEG:seg

Description

Indole-3-glycerol phosphate synthase chloroplastic

Coordinates

chr10:-:125102977..125107710

Molecular Weight (calculated)

44828.9 Da

IEP (calculated)

6.912

GRAVY (calculated)

-0.110

Length

417 amino acids

Sequence
(BLAST)

001: MEALAIGSAP RRPGARYSQL RRPGTLAVTT TATVACRPLT APSMDAAVGR PSRAPIRCTS AETDSVDEVA TSSHAAEANA GGTTEQEGNG SPVAAAAAYS
101: PVVAGVDGIR IRRRPVTGPA VHYVGPFQFR LENEGNTPRN ILEKIIWNKD VEVSQMKERR PLYMLKGPLE AAPPARDFVG ALKASYDRTG LPALIAEVKK
201: ASPSRGVIRE NFDPVQIAQA YEKNGAACLS VLTDEKYFQG SFYNLEAIRN AGVQCPLLCK EFIIDAWQLY YARSKGADAV LLIAAVLPDR DIKYMLKICK
301: ILGMAALVEV HDEREMDRVL GIDGVQLIGI NNRNLETFEV DITNTKKLLE GERGQVIAQK DVIVVGESAL FTPDDISFVQ NAGVKAVLVG ESLIKQEDPG
401: KAIAGLFGKD ISHAGAT

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.