CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91301
KRH35520

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	KRG91301	AT3G22440.1	15714319
AT2G04400.1	KRH35520	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14867	Soybean	nucleus, plastid	90.08	90.31
VIT_12s0057g01240.t01	Wine grape	cytosol	74.05	80.17
Solyc03g111850.2.1	Tomato	plastid	67.18	64.23
PGSC0003DMT400039190	Potato	plastid	66.92	63.99
AT2G04400.1	Thale cress	plastid	64.63	63.18
TraesCS7A01G512300.1	Wheat	cytosol	52.67	62.92
GSMUA_Achr3P04280_001	Banana	plastid	63.61	62.81
CDY15081	Canola	plastid	62.09	60.85
Bra013209.1-P	Field mustard	plastid	62.09	60.7
CDY66247	Canola	plastid	62.09	60.7
Zm00001d025652_P005	Maize	mitochondrion, plastid	64.38	60.67
HORVU7Hr1G114660.3	Barley	mitochondrion	53.44	59.49
EES12321	Sorghum	plastid	63.36	59.0
GSMUA_Achr3P12080_001	Banana	plastid	58.78	58.93
TraesCS2B01G348500.1	Wheat	plastid	61.07	58.68
HORVU2Hr1G081460.2	Barley	plastid	61.32	58.64
TraesCS2D01G329500.1	Wheat	plastid	61.07	58.25
HORVU5Hr1G052150.3	Barley	plastid	55.73	58.09
TraesCS5A01G169500.1	Wheat	plastid	55.73	58.09
TraesCS5D01G173900.1	Wheat	plastid	55.47	57.82
TraesCS2A01G335200.1	Wheat	plastid	60.56	57.63
TraesCS5B01G166300.1	Wheat	plastid	55.22	57.56
EES05044	Sorghum	plastid	54.2	56.05
TraesCS7B01G423900.1	Wheat	plastid	52.93	55.03
EES14765	Sorghum	plastid	53.18	54.71
Zm00001d024393_P001	Maize	plastid	52.93	54.31
TraesCS7D01G501700.1	Wheat	plastid	48.85	53.48
Os09t0255400-02	Rice	plastid	51.65	52.73
Zm00001d020008_P001	Maize	plastid	52.16	52.7
CDY00860	Canola	cytosol	12.72	52.63
OQU89210	Sorghum	plastid	52.42	51.12
CDY43301	Canola	plastid	36.13	48.8
CDX94822	Canola	plastid	19.85	44.83
TraesCS3D01G285000.1	Wheat	cytosol	26.21	42.39
Os08t0320400-01	Rice	plastid	24.43	41.56
CDY17450	Canola	plastid	35.11	37.3

Protein Annotations

KEGG:00400+4.1.1.48	EntrezGene:100790882	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	EMBL:ACUP02001272	InterPro:Aldolase_TIM
EnsemblPlantsGene:GLYMA_02G259000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	UniProt:I1JIA7	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth
EnsemblPlants:KRH73214	ProteinID:KRH73214	ProteinID:KRH73214.1	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614
PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI0002336D18	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:44605213..44610791

Molecular Weight (calculated)

43270.3 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.173

Length

393 amino acids

Sequence
(BLAST)

001: MEGLASLRVP FQTTQFHSSR PRTSILPSQA IFFHKRSSFS SFSASAQVES NDGSATVATP GESVTEALKT KEWEVGMFQN EVAASQGIRI RRRPPSGPPL
101: HYVGPFQFRL QNEGNTPRNI LEEIVWNKDT EVSHLKERKP LGVLKKALEN APPARDFIGA LKAANERTGL PGLIAEVKKA SPSRGILRED FDPVEIAKAY
201: EKGGAACLSV LTDEKYFKGS FENLEAIRMA GIKCPLLCKE FIIDAWQLYY ARTKGADAVL LIAAVLPDLD IKYMIKICKL LGLTALVEVH DEREFDRVLA
301: IEGIELIGIN NRNLETFELD ISITKKLLEG ERGKIIRERG ITMVGESGLF TPDDIAYVKE AGVKAILVGE SIVKQNDPGK GISNLFGKDI SLG

Best Arabidopsis Sequence Match ( AT5G48220.3 )
(BLAST)

001: MIRELVSIAF QLQEFGIDVR LCALYESSGI TEGSDSALEA KVSEQEVGMY QNEVVESQGI RIRRRPPTGP PLHYVGPFEF RLQNEGNTPR NILEEIVWHK
101: DKEVAQMKER KPLYSLKKAL DNVPPAKDFI GALRSAHQRT GLPGLIAEVK KASPSRGILR EDFNPVEIAQ AYEKGGAACL SVLTDDKYFK GSYENLQAIM
201: EAGVKCPLLL KEFIVEAWQI YYGRSKGADA VLLIASVLPD LDIKYMIKIC KILGMATLVE VHDEREMDRV LAIEGVELIG INNRNLETFE VDLGITKKLL
301: EGERGELIRQ KDILVVGESG LFTPEDIAFV QEAGVKAVLV GESLIKQSDP GKAISTLFGR DVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.