Factsheet for HORVU5Hr1G052150.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G033190.1
HORVU5Hr1G104870.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	HORVU3Hr1G033190.1	AT3G22440.1	15714319
AT2G04400.1	HORVU5Hr1G104870.1	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G166300.1	Wheat	plastid	97.88	97.88
TraesCS5A01G169500.1	Wheat	plastid	97.88	97.88
TraesCS5D01G173900.1	Wheat	plastid	97.61	97.61
Os09t0255400-02	Rice	plastid	78.51	76.88
HORVU7Hr1G114660.3	Barley	mitochondrion	66.05	70.54
Zm00001d020008_P001	Maize	plastid	69.76	67.61
OQU89210	Sorghum	plastid	70.82	66.25
GSMUA_Achr3P12080_001	Banana	plastid	62.6	60.2
VIT_12s0057g01240.t01	Wine grape	cytosol	56.23	58.4
KRH14867	Soybean	nucleus, plastid	58.09	55.87
KRH73214	Soybean	nucleus, plastid	58.09	55.73
Bra037502.1-P	Field mustard	plastid	55.44	54.71
AT5G48220.1	Thale cress	plastid	54.64	54.35
PGSC0003DMT400039190	Potato	plastid	57.56	52.8
Solyc03g111850.2.1	Tomato	plastid	57.56	52.8
HORVU2Hr1G081460.2	Barley	plastid	56.76	52.07
AT2G04400.1	Thale cress	plastid	53.58	50.25
Bra013209.1-P	Field mustard	plastid	51.99	48.76
CDY15081	Canola	plastid	51.72	48.63
CDY66247	Canola	plastid	51.72	48.51
CDY00860	Canola	cytosol	11.41	45.26
CDX86321	Canola	plastid	54.64	41.28
CDX85318	Canola	plastid	54.11	39.23
CDY43301	Canola	plastid	28.91	37.46
CDX94822	Canola	plastid	15.38	33.33
CDY17450	Canola	plastid	28.65	29.19

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	EMBL:AK359340	InterPro:Aldolase_TIM	UniProt:F2D630
GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G052150	EnsemblPlants:HORVU5Hr1G052150.3	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth
HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF14	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	UniParc:UPI000200569F	SEG:seg	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D630]

Coordinates

chrchr5H:-:407783139..407786233

Molecular Weight (calculated)

41221.5 Da

IEP (calculated)

6.327

GRAVY (calculated)

-0.105

Length

377 amino acids

Sequence
(BLAST)

001: MESLLAAAPF HVAAFSSVSS PSAHSPSVLR SVSGGRRAVR CAAAKEAILY ALEHDEMFNS EEVIQWESGK TINSIAAAQG IRIRRRCRPR YPSEGSGDDK
101: AVPRNILEQI VWDKEVEVSQ RKAKKPLKSV VESSEHAPPA RDFIGALTAA HSRNGVPALI AEVKKASPSR GVLRENFNPV EIAQAYEKNG AACLSILTDE
201: KHFQGSFENL ETVRNSGVQC PLLCKEFVID IWQIYYARSK GADAILLIAA VLPDLDMKYM LRICKNLGMT ALIEVHDEKE LDRVLRIDGV ELIGINNRSL
301: ETFVVDTSNT RMLMEKRGDI IKERGILVVG ESGLFTPDDV AYVHSAGVSA VLVGESLIKE EDPGQAIAGL FGKELLS

Best Arabidopsis Sequence Match ( AT5G48220.3 )
(BLAST)

001: MIRELVSIAF QLQEFGIDVR LCALYESSGI TEGSDSALEA KVSEQEVGMY QNEVVESQGI RIRRRPPTGP PLHYVGPFEF RLQNEGNTPR NILEEIVWHK
101: DKEVAQMKER KPLYSLKKAL DNVPPAKDFI GALRSAHQRT GLPGLIAEVK KASPSRGILR EDFNPVEIAQ AYEKGGAACL SVLTDDKYFK GSYENLQAIM
201: EAGVKCPLLL KEFIVEAWQI YYGRSKGADA VLLIASVLPD LDIKYMIKIC KILGMATLVE VHDEREMDRV LAIEGVELIG INNRNLETFE VDLGITKKLL
301: EGERGELIRQ KDILVVGESG LFTPEDIAFV QEAGVKAVLV GESLIKQSDP GKAISTLFGR DVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.