CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY34252
CDY38318
CDY46317

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	CDY34252	AT3G22440.1	15714319
AT2G04400.1	CDY38318	AT3G22440.1	15714319
AT2G04400.1	CDY46317	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013209.1-P	Field mustard	plastid	94.51	94.28
CDY66247	Canola	plastid	94.02	93.78
AT2G04400.1	Thale cress	plastid	83.79	83.58
CDY43301	Canola	plastid	57.11	78.69
VIT_12s0057g01240.t01	Wine grape	cytosol	62.59	69.15
CDY00860	Canola	cytosol	15.21	64.21
KRH14867	Soybean	nucleus, plastid	61.1	62.5
TraesCS7A01G512300.1	Wheat	cytosol	51.12	62.31
KRH73214	Soybean	nucleus, plastid	60.85	62.09
Solyc03g111850.2.1	Tomato	plastid	60.6	59.12
PGSC0003DMT400039190	Potato	plastid	60.35	58.88
CDY17450	Canola	plastid	54.11	58.65
HORVU7Hr1G114660.3	Barley	mitochondrion	50.62	57.51
GSMUA_Achr3P04280_001	Banana	plastid	56.86	57.29
TraesCS7B01G423900.1	Wheat	plastid	52.87	56.08
TraesCS7D01G501700.1	Wheat	plastid	49.38	55.15
GSMUA_Achr3P12080_001	Banana	plastid	52.87	54.08
Zm00001d025652_P005	Maize	mitochondrion, plastid	56.11	53.96
EES12321	Sorghum	plastid	56.36	53.55
Zm00001d024393_P001	Maize	plastid	50.87	53.26
HORVU2Hr1G081460.2	Barley	plastid	54.36	53.04
EES05044	Sorghum	plastid	49.88	52.63
TraesCS2B01G348500.1	Wheat	plastid	53.37	52.32
EES14765	Sorghum	plastid	49.63	52.09
TraesCS5D01G173900.1	Wheat	plastid	48.88	51.99
TraesCS5A01G169500.1	Wheat	plastid	48.88	51.99
CDY00859	Canola	mitochondrion	14.21	51.82
CDX94822	Canola	plastid	22.44	51.72
TraesCS5B01G166300.1	Wheat	plastid	48.63	51.72
HORVU5Hr1G052150.3	Barley	plastid	48.63	51.72
TraesCS2D01G329500.1	Wheat	plastid	53.12	51.7
TraesCS2A01G335200.1	Wheat	plastid	53.12	51.57
Zm00001d020008_P001	Maize	plastid	48.13	49.61
Os09t0255400-02	Rice	plastid	47.13	49.09
OQU89210	Sorghum	plastid	49.13	48.88
CDX86321	Canola	plastid	57.86	46.49
CDX85318	Canola	plastid	58.85	45.38
Os08t0320400-01	Rice	plastid	22.69	39.39
TraesCS3D01G285000.1	Wheat	cytosol	21.2	34.98

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	GO:A0A078FPS1	UniProt:A0A078FPS1	InterPro:Aldolase_TIM
EnsemblPlants:CDY15081	ProteinID:CDY15081	ProteinID:CDY15081.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00085221001	InterPro:IPR013785
InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854
PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00035	UniParc:UPI0004EEA289	SEG:seg

Description

BnaC03g44420DBnaC03g44420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPS1]

Coordinates

chrLK032051:-:401361..403806

Molecular Weight (calculated)

44037.2 Da

IEP (calculated)

8.189

GRAVY (calculated)

-0.172

Length

401 amino acids

Sequence
(BLAST)

001: MDALVPVQSA GQRLPVRLVS ASLHRCIGSV SIRRSVSGFA MDTRISSRAP SQFTIRSQQS DLKESLGVAS SSDLRIKEWE VDMYQNELAI SQGIRIRRKP
101: PSKAPLGYTG PFELRLLNGQ VADSPSNILE EITWFKDQEV SRMKELNPLE ALKKAVENAP PTRDFVGALR TAHQRTGFPG LIAEVKKASP SRGILKENFD
201: PVEIAQAYER GGAACLSVLT DQKYFKGGFE NLEAIRSAGV KCPLLCKEFV VDPWQIYYAR AKGADAVLLI AAILTDLEIT YLLKLSKKLG LAALVEVHDE
301: REMGRALGIE GIELVGINNR SLETFKVDIS NTKKLLEGEH GRQIREKDMI VVGESCLFTP DDIAYVQDAG VKAVLVGESI VKQNDPEKGI AGLFGKNISQ
401: T

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.