Factsheet for Os09t0255400-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0794900-01
Os07t0173200-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	Os03t0794900-01	AT3G22440.1	15714319
AT2G04400.1	Os07t0173200-02	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G052150.3	Barley	plastid	76.88	78.51
TraesCS5D01G173900.1	Wheat	plastid	76.62	78.25
TraesCS5B01G166300.1	Wheat	plastid	76.62	78.25
TraesCS5A01G169500.1	Wheat	plastid	76.36	77.98
OQU89210	Sorghum	plastid	67.01	64.02
Zm00001d020008_P001	Maize	plastid	64.68	64.01
GSMUA_Achr3P12080_001	Banana	plastid	60.26	59.18
VIT_12s0057g01240.t01	Wine grape	cytosol	53.51	56.75
Os08t0320400-01	Rice	plastid	34.03	56.71
KRH14867	Soybean	nucleus, plastid	53.51	52.55
AT5G48220.1	Thale cress	plastid	51.69	52.51
Bra037502.1-P	Field mustard	plastid	51.69	52.09
KRH73214	Soybean	nucleus, plastid	52.73	51.65
Solyc03g111850.2.1	Tomato	plastid	54.55	51.09
PGSC0003DMT400039190	Potato	plastid	54.03	50.61
AT2G04400.1	Thale cress	plastid	50.65	48.51
Bra013209.1-P	Field mustard	plastid	49.87	47.76
CDY66247	Canola	plastid	49.61	47.51
CDY15081	Canola	plastid	49.09	47.13
CDY00860	Canola	cytosol	10.13	41.05
CDX86321	Canola	plastid	50.91	39.28
CDX85318	Canola	plastid	50.39	37.31
CDY43301	Canola	plastid	28.05	37.11
CDY17450	Canola	plastid	27.01	28.11
CDX94822	Canola	plastid	12.47	27.59

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	EntrezGene:4346529	EMBL:AK059358	InterPro:Aldolase_TIM
ProteinID:BAD23564.1	ProteinID:BAT07078.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth
HAMAP:MF_00134_B	EnsemblPlantsGene:Os09g0255400	EnsemblPlants:Os09t0255400-02	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854
PANTHER:PTHR22854:SF14	UniProt:Q6K306	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI00003B06AE	RefSeq:XP_015612572.1
SEG:seg	:	:	:	:	:

Description

indole-3-glycerol phosphate synthaseSimilar to Indole-3-glycerol phosphate synthase, chloroplast precursor (EC 4.1.1.48) (IGPS). (Os09t0255400-01);Similar to indole-3-glycerol phosphate synthase. (Os09t0255400-02)

Coordinates

chr9:-:4201661..4204423

Molecular Weight (calculated)

42229.7 Da

IEP (calculated)

7.759

GRAVY (calculated)

-0.107

Length

385 amino acids

Sequence
(BLAST)

001: MESLLAASSS LPAAAFSPPS SLSSTSSSPH ALRSAVAGAA RAVRCSAAKD SILYALEHDE MFNSAEVIQW ESGKSINSIA AAQGIRIRRR CRPRYPSEGS
101: GADKAVPRNM LEQIIWDKEV EVSQRKAKKP LQKVIESSQH APPARDFVGA LTAAYSRNVA PALIAEVKKA SPSRGVLRED FNPVEIAQSY EKNGAACLSI
201: LTDEKHFQGS FENLETVRNS GVKCPLLCKE FVIDIWQIYY ARSKGADAIL LIAAVLPDLD IKYMLRICKN LGMTALIEVH DERELDRVLK IDGVQLIGIN
301: NRSLETFKVD TSNTKTLLEK RGDLIRDKGI LVVGESGLFT PDDVAYVQNA GVSAVSLLIT RFQLSWSYMC FKFPAEILYG TSEMD

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.