CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037502.1-P	Field mustard	plastid	64.81	88.22
CDX86321	Canola	plastid	81.54	84.97
AT5G48220.1	Thale cress	plastid	58.65	80.47
VIT_12s0057g01240.t01	Wine grape	cytosol	50.19	71.9
GSMUA_Achr3P04280_001	Banana	plastid	47.88	62.56
Solyc03g111850.2.1	Tomato	plastid	48.85	61.8
PGSC0003DMT400039190	Potato	plastid	48.85	61.8
TraesCS7A01G512300.1	Wheat	cytosol	38.27	60.49
CDY66247	Canola	plastid	46.73	60.45
Zm00001d025652_P005	Maize	mitochondrion, plastid	47.88	59.71
CDY15081	Canola	plastid	45.38	58.85
EES12321	Sorghum	plastid	47.69	58.77
GSMUA_Achr3P12080_001	Banana	plastid	43.65	57.91
HORVU2Hr1G081460.2	Barley	plastid	45.58	57.66
TraesCS2D01G329500.1	Wheat	plastid	45.58	57.52
TraesCS2B01G348500.1	Wheat	plastid	45.19	57.46
HORVU7Hr1G114660.3	Barley	mitochondrion	38.65	56.94
TraesCS2A01G335200.1	Wheat	plastid	45.19	56.9
HORVU5Hr1G052150.3	Barley	plastid	39.23	54.11
TraesCS5A01G169500.1	Wheat	plastid	39.23	54.11
TraesCS5D01G173900.1	Wheat	plastid	39.23	54.11
TraesCS5B01G166300.1	Wheat	plastid	39.04	53.85
TraesCS7B01G423900.1	Wheat	plastid	39.04	53.7
CDY00860	Canola	cytosol	9.81	53.68
EES05044	Sorghum	plastid	39.04	53.42
TraesCS7D01G501700.1	Wheat	plastid	36.15	52.37
EES14765	Sorghum	plastid	38.08	51.83
Zm00001d024393_P001	Maize	plastid	37.69	51.17
Zm00001d020008_P001	Maize	plastid	38.08	50.9
Os09t0255400-02	Rice	plastid	37.31	50.39
OQU89210	Sorghum	plastid	39.04	50.37
CDY43301	Canola	plastid	26.54	47.42
Os08t0320400-01	Rice	plastid	18.08	40.69
TraesCS3D01G285000.1	Wheat	cytosol	18.65	39.92
CDX94822	Canola	plastid	13.08	39.08
CDY17450	Canola	plastid	26.35	37.03
CDY00859	Canola	mitochondrion	2.88	13.64

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	GO:A0A078DDE1	InterPro:Aldolase_TIM	EnsemblPlants:CDX85318
ProteinID:CDX85318	ProteinID:CDX85318.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00142982001	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS
InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00035	UniParc:UPI0004EDCB28	SEG:seg	:

Description

BnaC07g26290D

Coordinates

chrLK031841:+:1183394..1186417

Molecular Weight (calculated)

57476.5 Da

IEP (calculated)

8.445

GRAVY (calculated)

-0.137

Length

520 amino acids

Sequence
(BLAST)

001: MHGRVQYSSN GSFATSTGPI RLFVIAGNYS GLHPRDIPID NKWTDREYWT LLLPCLFGHQ YRMCLPRVCL RSLLPSDSKG SLFPTTLVPN SFGRAQVGPT
101: YVFCKVIIRR TKVSPPLSTY KASIFPAIAS EETSEKMEGL VSFQPFPSSV IQRRLSTVYL HRLTRSSSSS SSCAPLRAQQ SGITGGSESV SSALEGKVSE
201: QEVVIYQDEV VASQGIRIRR RPPTGPPLHY VGPFEFRLQN EGNTPRNILE EIVWNKDKEV TLMKEKRPLY TLKKALETVP PPRDFIGALR SAHQRTGLPG
301: LIAEVKKASP SRGILREDFD PVAIAQAYEK GGAACLSVLT DEKYFKGSFE NLQAIREAGV KCPLLCKEFI IEAWQIYYGR SKGADAVLLI ASVLPDLDIK
401: YMIKICKILG MATLVEVHDE REMDRVLAIE GVELIGINNR NLETFEVDIG ITKRLLEGER GELIRQKDIL VVGESGLFTP EDIAFVQEAG VKAVLVGESL
501: VKQSDPGQGI SALFGRDVSG

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.