CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY34252
CDY38318
CDY46317

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	CDY34252	AT3G22440.1	15714319
AT2G04400.1	CDY38318	AT3G22440.1	15714319
AT2G04400.1	CDY46317	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17450	Canola	plastid	78.01	61.35
CDY66247	Canola	plastid	80.41	58.21
CDY15081	Canola	plastid	78.69	57.11
CDY00860	Canola	cytosol	17.87	54.74
CDY00859	Canola	mitochondrion	20.27	53.64
AT2G04400.1	Thale cress	plastid	71.13	51.49
VIT_12s0057g01240.t01	Wine grape	cytosol	49.48	39.67
Os08t0320400-01	Rice	plastid	29.9	37.66
CDX94822	Canola	plastid	21.99	36.78
KRH14867	Soybean	nucleus, plastid	49.14	36.48
KRH73214	Soybean	nucleus, plastid	48.8	36.13
PGSC0003DMT400039190	Potato	plastid	48.8	34.55
Solyc03g111850.2.1	Tomato	plastid	48.8	34.55
TraesCS7A01G512300.1	Wheat	cytosol	37.8	33.43
GSMUA_Achr3P04280_001	Banana	plastid	45.36	33.17
TraesCS7D01G501700.1	Wheat	plastid	40.89	33.15
TraesCS3D01G285000.1	Wheat	cytosol	27.49	32.92
HORVU7Hr1G114660.3	Barley	mitochondrion	38.49	31.73
TraesCS7B01G423900.1	Wheat	plastid	40.89	31.48
GSMUA_Achr3P12080_001	Banana	plastid	40.89	30.36
HORVU2Hr1G081460.2	Barley	plastid	42.61	30.17
Zm00001d025652_P005	Maize	mitochondrion, plastid	42.96	29.98
TraesCS2B01G348500.1	Wheat	plastid	41.92	29.83
EES12321	Sorghum	plastid	42.96	29.62
TraesCS2D01G329500.1	Wheat	plastid	41.58	29.37
TraesCS2A01G335200.1	Wheat	plastid	41.58	29.3
Zm00001d024393_P001	Maize	plastid	38.49	29.24
HORVU5Hr1G052150.3	Barley	plastid	37.46	28.91
TraesCS5A01G169500.1	Wheat	plastid	37.46	28.91
TraesCS5D01G173900.1	Wheat	plastid	37.46	28.91
EES14765	Sorghum	plastid	37.8	28.8
TraesCS5B01G166300.1	Wheat	plastid	37.11	28.65
EES05044	Sorghum	plastid	37.11	28.42
Os09t0255400-02	Rice	plastid	37.11	28.05
Zm00001d020008_P001	Maize	plastid	37.46	28.02
CDX86321	Canola	plastid	46.74	27.25
OQU89210	Sorghum	plastid	37.11	26.8
CDX85318	Canola	plastid	47.42	26.54

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	GO:A0A078I0C9	UniProt:A0A078I0C9	InterPro:Aldolase_TIM
EnsemblPlants:CDY43301	ProteinID:CDY43301	ProteinID:CDY43301.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425
GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00076344001	InterPro:IPR013785	InterPro:Indole-3-glycerol_P_synth	PFAM:PF00218
PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00035	UniParc:UPI0004EE14A0
SEG:seg	:	:	:	:	:

Description

BnaC06g01670DBnaC06g01670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0C9]

Coordinates

chrLK032551:-:231495..233190

Molecular Weight (calculated)

32629.7 Da

IEP (calculated)

9.866

GRAVY (calculated)

-0.088

Length

291 amino acids

Sequence
(BLAST)

001: MDGLFLVQSA GQRLISPSLY RCIGYVSIRR PVSGFAMYTR ISSRSPSQFT IRSQQVRWHR LLPFVLTSSS VENDVRIKEW EVDVYQNELA INQGIKIRRK
101: PPSIAPLGNS GPFELRLLNG QVADSPSNIL EEITWYKDQE VSRMKELNPL EALKKAVENA PPTRDFVGAL RLAHHRTSFP ALIAEVKKGS PSRGILKENF
201: DHVEIAQTYE RGGAAFLSVL TDQKYFKGGC ENLEAIRSAG VKMIYYDRTK GVDAVLLIVA ILTDLEITFL LKLSKKLGLA ALVEVWLVSP L

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.