CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY34252
CDY38318
CDY46317

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	CDY34252	AT3G22440.1	15714319
AT2G04400.1	CDY38318	AT3G22440.1	15714319
AT2G04400.1	CDY46317	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43301	Canola	plastid	54.74	17.87
TraesCS3D01G285000.1	Wheat	cytosol	43.16	16.87
Os08t0320400-01	Rice	plastid	37.89	15.58
CDY15081	Canola	plastid	64.21	15.21
CDY66247	Canola	plastid	64.21	15.17
AT2G04400.1	Thale cress	plastid	60.0	14.18
TraesCS7A01G512300.1	Wheat	cytosol	48.42	13.98
VIT_12s0057g01240.t01	Wine grape	cytosol	52.63	13.77
KRH14867	Soybean	nucleus, plastid	52.63	12.76
HORVU7Hr1G114660.3	Barley	mitochondrion	47.37	12.75
KRH73214	Soybean	nucleus, plastid	52.63	12.72
TraesCS7D01G501700.1	Wheat	plastid	47.37	12.53
TraesCS7B01G423900.1	Wheat	plastid	48.42	12.17
GSMUA_Achr3P12080_001	Banana	plastid	49.47	11.99
EES05044	Sorghum	plastid	47.37	11.84
Solyc03g111850.2.1	Tomato	plastid	50.53	11.68
GSMUA_Achr3P04280_001	Banana	plastid	48.42	11.56
TraesCS5D01G173900.1	Wheat	plastid	45.26	11.41
TraesCS5A01G169500.1	Wheat	plastid	45.26	11.41
HORVU5Hr1G052150.3	Barley	plastid	45.26	11.41
TraesCS2B01G348500.1	Wheat	plastid	48.42	11.25
Zm00001d024393_P001	Maize	plastid	45.26	11.23
PGSC0003DMT400039190	Potato	plastid	48.42	11.19
HORVU2Hr1G081460.2	Barley	plastid	48.42	11.19
TraesCS2D01G329500.1	Wheat	plastid	48.42	11.16
TraesCS5B01G166300.1	Wheat	plastid	44.21	11.14
Zm00001d025652_P005	Maize	mitochondrion, plastid	48.42	11.03
EES14765	Sorghum	plastid	44.21	10.99
EES12321	Sorghum	plastid	48.42	10.9
TraesCS2A01G335200.1	Wheat	plastid	46.32	10.65
CDX86321	Canola	plastid	53.68	10.22
OQU89210	Sorghum	plastid	43.16	10.17
Os09t0255400-02	Rice	plastid	41.05	10.13
Zm00001d020008_P001	Maize	plastid	41.05	10.03
CDY17450	Canola	plastid	38.95	10.0
CDX85318	Canola	plastid	53.68	9.81
CDX94822	Canola	plastid	12.63	6.9
CDY00859	Canola	mitochondrion	2.11	1.82

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	GO:A0A078EFJ5	InterPro:Aldolase_TIM	EnsemblPlants:CDY00860
ProteinID:CDY00860	ProteinID:CDY00860.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00110805001	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS
InterPro:Indole-3-glycerol_P_synth	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	UniPathway:UPA00035	UniParc:UPI0004EEC299	:	:	:

Description

BnaCnng00600D

Coordinates

chrLK031922:+:715725..716086

Molecular Weight (calculated)

10762.5 Da

IEP (calculated)

10.707

GRAVY (calculated)

-0.257

Length

95 amino acids

Sequence
(BLAST)

1: MVQRPRGFPD EGTNPLEALK KVVENAPPTR DFLGALRMAH QRTCFPALIA EVKKASPSRG ILKENFDPVC DSCLMFLSVK IKKKLWKHRS LMVKV

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.