CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037502.1-P	Field mustard	plastid	70.54	92.15
CDX85318	Canola	plastid	84.97	81.54
AT5G48220.1	Thale cress	plastid	60.52	79.68
VIT_12s0057g01240.t01	Wine grape	cytosol	52.1	71.63
GSMUA_Achr3P04280_001	Banana	plastid	50.3	63.07
Solyc03g111850.2.1	Tomato	plastid	51.3	62.29
PGSC0003DMT400039190	Potato	plastid	51.1	62.04
TraesCS7A01G512300.1	Wheat	cytosol	39.88	60.49
CDY66247	Canola	plastid	47.9	59.45
EES12321	Sorghum	plastid	49.9	59.0
Zm00001d025652_P005	Maize	mitochondrion, plastid	49.3	58.99
GSMUA_Achr3P12080_001	Banana	plastid	45.49	57.91
CDY15081	Canola	plastid	46.49	57.86
HORVU7Hr1G114660.3	Barley	mitochondrion	40.88	57.79
HORVU2Hr1G081460.2	Barley	plastid	47.49	57.66
TraesCS2D01G329500.1	Wheat	plastid	47.49	57.52
TraesCS2B01G348500.1	Wheat	plastid	47.09	57.46
TraesCS2A01G335200.1	Wheat	plastid	46.69	56.42
HORVU5Hr1G052150.3	Barley	plastid	41.28	54.64
TraesCS5D01G173900.1	Wheat	plastid	41.28	54.64
TraesCS5A01G169500.1	Wheat	plastid	41.28	54.64
TraesCS5B01G166300.1	Wheat	plastid	41.08	54.38
TraesCS7B01G423900.1	Wheat	plastid	40.88	53.97
EES05044	Sorghum	plastid	40.88	53.68
CDY00860	Canola	cytosol	10.22	53.68
TraesCS7D01G501700.1	Wheat	plastid	37.88	52.65
EES14765	Sorghum	plastid	40.28	52.62
Zm00001d024393_P001	Maize	plastid	39.68	51.7
Zm00001d020008_P001	Maize	plastid	39.88	51.16
Os09t0255400-02	Rice	plastid	39.28	50.91
OQU89210	Sorghum	plastid	40.48	50.12
CDY43301	Canola	plastid	27.25	46.74
TraesCS3D01G285000.1	Wheat	cytosol	20.04	41.15
Os08t0320400-01	Rice	plastid	18.84	40.69
CDX94822	Canola	plastid	13.63	39.08
CDY17450	Canola	plastid	27.05	36.49
CDY00859	Canola	mitochondrion	3.21	14.55

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	GO:A0A078DAM0	InterPro:Aldolase_TIM	EnsemblPlants:CDX86321
ProteinID:CDX86321	ProteinID:CDX86321.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00144441001	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS
InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00035	UniParc:UPI0004EE401E	SEG:seg	:

Description

BnaA06g30380D

Coordinates

chrLK031845:-:923810..926916

Molecular Weight (calculated)

55543.7 Da

IEP (calculated)

8.935

GRAVY (calculated)

-0.096

Length

499 amino acids

Sequence
(BLAST)

001: MHGRVQYSSN GSFATSTGPI RLFVIAGNYS GLHPRDIQID NKWTDREYWT LLLPCLFGYQ YRMCLPCVCL RSLLPSDSKG SLFPTLLVPN SFRVFVSRVG
101: PIFCLCKVII RRTKKIRKKM EGLVSFQPFP SSVIQRRLST VYLHRLTRSS SCAPLRAQQS GITGGSESVS SALEGKASEQ EVVIYQDEVV ASQGIRIRRR
201: PLTGPPLHYV GPFEFRLQNE GNTPRNILEE IVWHKDKEVA QMKEKRPLYT LKKALETVPP PRDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFDP
301: VAIAQAYEKG GAACLSVLTD EKYFKGSFEN LQAIREAGVK CPLLCKEFII EAWQIYYGRS KGADAILLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER
401: EMDRVLAIDG VELIGINNRN LETFEVDIGI TKRLLEGERG ELIRQKDILV VGESGLFSPE DIAFVQEAGV KAVLVGESLV KQSDPGQGIS ALFGRDVSG

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.