Factsheet for PGSC0003DMT400039190

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400077344

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	PGSC0003DMT400077344	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111850.2.1	Tomato	plastid	87.1	87.1
VIT_12s0057g01240.t01	Wine grape	cytosol	65.94	74.66
KRH14867	Soybean	nucleus, plastid	64.72	67.86
KRH73214	Soybean	nucleus, plastid	63.99	66.92
Bra037502.1-P	Field mustard	plastid	61.8	66.49
AT5G48220.1	Thale cress	plastid	61.07	66.23
GSMUA_Achr3P04280_001	Banana	plastid	61.56	63.57
TraesCS7A01G512300.1	Wheat	cytosol	49.39	61.7
AT2G04400.1	Thale cress	plastid	59.37	60.7
CDY66247	Canola	plastid	59.12	60.45
CDY15081	Canola	plastid	58.88	60.35
Bra013209.1-P	Field mustard	plastid	58.88	60.2
Zm00001d025652_P005	Maize	mitochondrion, plastid	61.07	60.19
EES12321	Sorghum	plastid	61.07	59.48
TraesCS2B01G348500.1	Wheat	plastid	58.88	59.17
HORVU2Hr1G081460.2	Barley	plastid	58.64	58.64
TraesCS2D01G329500.1	Wheat	plastid	58.64	58.5
GSMUA_Achr3P12080_001	Banana	plastid	55.72	58.42
HORVU7Hr1G114660.3	Barley	mitochondrion	50.12	58.36
TraesCS2A01G335200.1	Wheat	plastid	58.39	58.11
HORVU5Hr1G052150.3	Barley	plastid	52.8	57.56
TraesCS5D01G173900.1	Wheat	plastid	52.55	57.29
TraesCS5A01G169500.1	Wheat	plastid	52.55	57.29
TraesCS5B01G166300.1	Wheat	plastid	52.31	57.03
Zm00001d024393_P001	Maize	plastid	52.55	56.4
EES05044	Sorghum	plastid	51.34	55.53
EES14765	Sorghum	plastid	51.34	55.24
TraesCS7B01G423900.1	Wheat	plastid	50.37	54.76
Os09t0255400-02	Rice	plastid	50.61	54.03
TraesCS7D01G501700.1	Wheat	plastid	46.47	53.2
Zm00001d020008_P001	Maize	plastid	50.12	52.96
OQU89210	Sorghum	plastid	51.58	52.61
CDX86321	Canola	plastid	62.04	51.1
CDX85318	Canola	plastid	61.8	48.85
CDY43301	Canola	plastid	34.55	48.8
CDY00860	Canola	cytosol	11.19	48.42
TraesCS3D01G285000.1	Wheat	cytosol	26.03	44.03
CDX94822	Canola	plastid	17.03	40.23
Os08t0320400-01	Rice	plastid	21.9	38.96
CDY17450	Canola	plastid	33.09	36.76

Protein Annotations

KEGG:00400+4.1.1.48	EntrezGene:102596235	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM	GO:GO:0003674
GO:GO:0003824	GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	UniProt:M1B7W3	HAMAP:MF_00134_B	PFAM:PF00218
EnsemblPlantsGene:PGSC0003DMG400015153	PGSC:PGSC0003DMG400015153	EnsemblPlants:PGSC0003DMT400039190	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI000295B17A	RefSeq:XP_006351424.1	SEG:seg	:

Description

Tryptophan biosynthesis protein, trpc [Source:PGSC_GENE;Acc:PGSC0003DMG400015153]

Coordinates

chr3:-:51501379..51506789

Molecular Weight (calculated)

45185.9 Da

IEP (calculated)

7.845

GRAVY (calculated)

-0.085

Length

411 amino acids

Sequence
(BLAST)

001: MDSVMPLRTT TAATATAATA AATVRPRFSF QLLANPRPRK PAFSLSVPTT IFTTHRARIL PQFTPVRAQE DGSAVVSEST IPEGDALKIK EWEVARFQDE
101: IAASQGIKIR RRPTTGPPLH YVGPFEFRMQ NEGNTPINIL EEIIWYKDKE VSQMKEKKPL LLLKKLLSGV PPTRDFLGAL KESYSRTGLP ALIAEVKKAS
201: PSRGVLREDF NPVEIAKAYE RGGAACLSVL TDQKYFQGSF ENLEAIRNAG VECPLLCKEF VIEAWQIYYA RVKGADAILL IAAVLPNLDI QYMIKICKLL
301: GLTALVEVHD EMEMDRVLGI DGVELIGINN RDLGTFKVDI SNTKKLLEGE RGERIREKGI IVVGESGLFT PADIGYVQDA GVKAVLVGES LVKQEDPAKG
401: ISGLFGKDIS C

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.