Factsheet for Bra013209.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023825.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	Bra023825.1-P	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66247	Canola	plastid	98.76	98.76
CDY15081	Canola	plastid	94.28	94.51
AT2G04400.1	Thale cress	plastid	85.07	85.07
VIT_12s0057g01240.t01	Wine grape	cytosol	62.19	68.87
Bra037502.1-P	Field mustard	plastid	59.7	62.83
TraesCS7A01G512300.1	Wheat	cytosol	51.24	62.61
KRH14867	Soybean	nucleus, plastid	60.95	62.5
KRH73214	Soybean	nucleus, plastid	60.7	62.09
Solyc03g111850.2.1	Tomato	plastid	60.7	59.37
PGSC0003DMT400039190	Potato	plastid	60.2	58.88
HORVU7Hr1G114660.3	Barley	mitochondrion	51.49	58.64
GSMUA_Achr3P04280_001	Banana	plastid	57.21	57.79
TraesCS7B01G423900.1	Wheat	plastid	53.98	57.41
TraesCS7D01G501700.1	Wheat	plastid	50.25	56.27
GSMUA_Achr3P12080_001	Banana	plastid	53.48	54.85
Zm00001d025652_P005	Maize	mitochondrion, plastid	56.72	54.68
Zm00001d024393_P001	Maize	plastid	51.49	54.05
EES12321	Sorghum	plastid	56.47	53.79
EES05044	Sorghum	plastid	50.5	53.42
HORVU2Hr1G081460.2	Barley	plastid	54.48	53.28
EES14765	Sorghum	plastid	50.5	53.14
TraesCS2B01G348500.1	Wheat	plastid	53.73	52.81
TraesCS5A01G169500.1	Wheat	plastid	49.01	52.25
TraesCS5D01G173900.1	Wheat	plastid	49.01	52.25
TraesCS2D01G329500.1	Wheat	plastid	53.48	52.18
TraesCS5B01G166300.1	Wheat	plastid	48.76	51.99
HORVU5Hr1G052150.3	Barley	plastid	48.76	51.99
TraesCS2A01G335200.1	Wheat	plastid	53.23	51.82
Zm00001d020008_P001	Maize	plastid	48.51	50.13
Os09t0255400-02	Rice	plastid	47.76	49.87
OQU89210	Sorghum	plastid	49.01	48.88
Os08t0320400-01	Rice	plastid	23.38	40.69
TraesCS3D01G285000.1	Wheat	cytosol	21.39	35.39

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM	EnsemblPlantsGene:Bra013209	EnsemblPlants:Bra013209.1
EnsemblPlants:Bra013209.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	UniProt:M4D9P9	HAMAP:MF_00134_B	PFAM:PF00218
ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI000254089A
SEG:seg	:	:	:	:	:

Description

AT2G04400 (E=1e-188) | indole-3-glycerol phosphate synthase (IGPS)

Coordinates

chrA03:+:19867812..19870123

Molecular Weight (calculated)

44134.4 Da

IEP (calculated)

8.572

GRAVY (calculated)

-0.178

Length

402 amino acids

Sequence
(BLAST)

001: MDALVPVQSA GQRLPLRLVS PSLHRCIGSV SIRRSVSGFA MDTRISSRSP SQFTIRSQQS DLKESLGGVA SSSDVRIKEW EVDMYQNELA ISQGIRIRRK
101: PPSKAPLGYS GPFELRLLNG QVADSPSNIL EEITWFKDQE VSRMKELNPL EALKKAVENA PPTRDFVGAL RMAHQRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE RGGAACLSVL TDQKYFKGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RSKGADAVLL IAAILTDLEI TYLLKLSKKL GLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFKVDI SNTKKLLEGE HGRQIREKDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: QT

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.