Factsheet for GSMUA_Achr3P04280_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12700_001
GSMUA_Achr4P28440_001
GSMUA_Achr7P01520_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	GSMUA_Achr2P12700_001	AT3G22440.1	15714319
AT2G04400.1	GSMUA_Achr4P28440_001	AT3G22440.1	15714319
AT2G04400.1	GSMUA_Achr7P01520_001	AT3G22440.1	15714319
AT2G04400.1	GSMUA_AchrUn_...	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g01240.t01	Wine grape	cytosol	64.32	70.52
Bra037502.1-P	Field mustard	plastid	63.32	65.97
KRH14867	Soybean	nucleus, plastid	64.07	65.05
AT5G48220.1	Thale cress	plastid	61.06	64.12
GSMUA_Achr3P12080_001	Banana	plastid	62.81	63.78
KRH73214	Soybean	nucleus, plastid	62.81	63.61
Zm00001d025652_P005	Maize	mitochondrion, plastid	65.83	62.83
HORVU2Hr1G081460.2	Barley	plastid	64.32	62.29
PGSC0003DMT400039190	Potato	plastid	63.57	61.56
EES12321	Sorghum	plastid	65.08	61.37
TraesCS2B01G348500.1	Wheat	plastid	63.07	61.37
Solyc03g111850.2.1	Tomato	plastid	63.07	61.07
TraesCS2D01G329500.1	Wheat	plastid	63.07	60.92
TraesCS2A01G335200.1	Wheat	plastid	62.56	60.29
AT2G04400.1	Thale cress	plastid	60.05	59.45
Bra013209.1-P	Field mustard	plastid	57.79	57.21
CDY66247	Canola	plastid	57.54	56.97
CDY15081	Canola	plastid	57.29	56.86
CDX86321	Canola	plastid	63.07	50.3
CDY00860	Canola	cytosol	11.56	48.42
CDX85318	Canola	plastid	62.56	47.88
CDY43301	Canola	plastid	33.17	45.36
TraesCS3D01G285000.1	Wheat	cytosol	27.39	44.86
CDX94822	Canola	plastid	16.83	38.51
CDY17450	Canola	plastid	31.16	33.51

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G04280_001
EnsemblPlants:GSMUA_Achr3P04280_001	EnsemblPlants:GSMUA_Achr3T04280_001	InterPro:IPR013785	InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	UniProt:M0SBP6
HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854	PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	UniParc:UPI000295BD4E	SEG:seg	:	:	:

Description

Indole-3-glycerol phosphate synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G04280_001]

Coordinates

chr3:+:2735659..2742960

Molecular Weight (calculated)

44191.3 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.299

Length

398 amino acids

Sequence
(BLAST)

001: MDGIALGTPP RFRVASPCFS SSRFRRRLLS LDPAPGVPMD RPRRPCALRC TTAEEASETE EECDPPTSGG QKIANSVEIK EWQNGNVVDN AASRQGIQIR
101: RRPLTGPPKH YVGPFEFRLE NEGNTPRNIL EKIIWDKDME LKERRPLTTL KKALEDAPPV RDFVGALKAS VKNTGMPALI AEVKKASPSR GVLRENFDPV
201: KIASAYEKFG ATCISVLTDE KYFQGSFENL EAIRRAGVKC PLLCKEFIID AWQIYYARSK GADAILLIAA VLPDLDIKYL TKICRLLGLA TLVEVHNERE
301: MDRVLSIEGI QLIGINNRDL ETFQVDISNT KRLLEGERGE LIRQRDIIVV GESGLFTPED ISYVQDAGVK AVLVGESLIK QDDPGKAISG LFGKDISK

Best Arabidopsis Sequence Match ( AT5G48220.1 )
(BLAST)

001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE

Arabidopsis Description

AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.