Factsheet for GSMUA_AchrUn_randomP23800_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P02250_001
GSMUA_Achr2P05710_001
GSMUA_Achr2P12700_001
GSMUA_Achr2P16570_001
GSMUA_Achr3P04280_001
GSMUA_Achr3P07830_001
GSMUA_Achr3P12080_001
GSMUA_Achr3P16830_001
GSMUA_Achr3P20190_001
GSMUA_Achr3P21850_001
GSMUA_Achr4P28440_001
GSMUA_Achr4P30910_001
GSMUA_Achr4P30930_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P17510_001
GSMUA_Achr6P24180_001
GSMUA_Achr7P01520_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P08440_001
GSMUA_Achr8P29000_001
GSMUA_Achr9P08130_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	GSMUA_Achr4P30910_001	AT1G06450.1	21798944
AT3G22440.1	GSMUA_Achr4P30930_001	AT1G06450.1	21798944
AT3G22440.1	GSMUA_Achr10P...	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr3P21850_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr6P17510_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr6P24180_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr8P08440_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr3P04280_001	AT2G04400.1	15714319
AT3G22440.1	GSMUA_Achr3P12080_001	AT2G04400.1	15714319
AT3G22440.1	GSMUA_Achr2P12700_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_Achr4P28440_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_Achr7P01520_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_AchrUn_...	AT4G14900.1	21798944
AT4G14900.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr3P07830_001	AT3G13990.1	21798944
AT4G14900.1	GSMUA_Achr3P20190_001	AT3G13990.1	21798944
AT4G14900.1	GSMUA_Achr2P05710_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr3P16830_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr8P29000_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr9P08130_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr2P16570_001	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P12700_001	Banana	nucleus	84.62	40.49
GSMUA_Achr7P01520_001	Banana	nucleus	80.77	38.73
GSMUA_Achr2P05710_001	Banana	nucleus	27.35	32.99
Os07t0173200-02	Rice	cytosol	65.38	28.65
VIT_05s0020g03470.t01	Wine grape	nucleus	60.26	27.01
KRG91301	Soybean	cytosol	59.83	26.72
KRH35520	Soybean	cytosol	59.83	26.42
Solyc09g076050.2.1	Tomato	nucleus	54.7	24.9
PGSC0003DMT400077344	Potato	nucleus	54.7	24.9
Os03t0794900-01	Rice	nucleus	55.98	23.82
Zm00001d018911_P001	Maize	cytosol	61.54	23.72
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	58.55	23.7
KXG34492	Sorghum	nucleus	61.54	23.3
TraesCS5A01G434500.1	Wheat	cytosol	55.13	23.29
HORVU5Hr1G104870.1	Barley	cytosol	55.13	23.24
TraesCS5B01G437500.2	Wheat	cytosol	54.7	23.06
TraesCS5D01G442300.1	Wheat	cytosol	53.85	22.83
CDY46317	Canola	cytosol, nucleus, plastid	49.57	22.1
CDY34252	Canola	cytosol, nucleus, plastid	49.15	22.03
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	50.0	21.99
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	49.15	21.54
AT4G14900.1	Thale cress	nucleus	47.01	20.68
GSMUA_Achr9P09220_001	Banana	nucleus	25.64	15.15
CDY38318	Canola	nucleus	32.48	14.31
GSMUA_Achr8P29000_001	Banana	nucleus	29.06	12.59
GSMUA_Achr9P08130_001	Banana	cytosol	28.63	12.41
GSMUA_Achr6P24860_001	Banana	nucleus	24.79	11.96
GSMUA_Achr10P...	Banana	nucleus	26.07	11.75
GSMUA_Achr5P16090_001	Banana	nucleus	30.34	11.68
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	29.06	11.56
GSMUA_Achr4P28440_001	Banana	cytosol	2.99	2.28

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP23800_001	EnsemblPlants:GSMUA_AchrUn_randomT23800_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG23800_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF2	PFAM:PF07899	SEG:seg	UniParc:UPI000295C588	UniProt:M0UBT8
MapMan:35.1	:	:	:	:	:

Description

frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23800_001]

Coordinates

chrchrUn_random:+:117029824..117030827

Molecular Weight (calculated)

25322.6 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.731

Length

234 amino acids

Sequence
(BLAST)

001: EELISKGHQL DAINFAYEAG LQDKFTPVSL LKSFLKDSNK ATSTFEDHNG GGQTTNYTCR KEQSIIRAAI KCIQEHKLEA EFPLESLQKR LEQLEKAKVE
101: KKKPSGGGPA APANKRTRAN NGGPMPPAKA GRLTNNVHVS SPAAPAFVRS PSAHTTYPAA APYPYDSPAG HGVYGSRSPP DIRDSYRYPA EVGPVALGAP
201: YHSPPMSYPV YGNYNPLGGY NNGVAPGYQQ AYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.