Factsheet for GSMUA_Achr4P30930_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30910_001	Banana	nucleus	85.64	49.41
AT3G44240.1	Thale cress	cytosol	33.85	27.62
GSMUA_Achr9P13270_001	Banana	cytosol	35.38	25.09
GSMUA_Achr9P22440_001	Banana	cytosol	30.26	23.41
GSMUA_Achr3P04600_001	Banana	nucleus	28.21	22.45
AT1G61470.1	Thale cress	nucleus	31.79	22.3
GSMUA_Achr6P19450_001	Banana	cytosol	27.69	22.13
GSMUA_Achr6P19460_001	Banana	cytosol	19.49	21.97
GSMUA_Achr9P29700_001	Banana	cytosol	23.59	21.6
GSMUA_Achr4P04150_001	Banana	cytosol	29.74	21.56
GSMUA_AchrUn_...	Banana	mitochondrion	28.21	21.4
GSMUA_Achr8P18010_001	Banana	mitochondrion	28.21	21.24
GSMUA_Achr4P04220_001	Banana	nucleus	29.23	21.19
AT1G27890.1	Thale cress	cytosol	32.31	20.86
GSMUA_Achr4P11450_001	Banana	cytosol	28.72	20.82
AT1G27820.1	Thale cress	cytosol	32.31	20.32
GSMUA_Achr1P10040_001	Banana	nucleus	28.72	20.07
CDY26919	Canola	cytosol	31.79	19.25
CDX73277	Canola	cytosol	31.79	19.2
GSMUA_Achr2P05120_001	Banana	cytosol	23.59	17.9
AT1G06450.1	Thale cress	cytosol	28.72	15.56
CDY09974	Canola	cytosol, mitochondrion, nucleus	28.72	15.26
CDY09972	Canola	cytosol, mitochondrion, nucleus	29.23	15.12
CDY06214	Canola	cytosol, mitochondrion, nucleus	28.21	14.99
Bra032421.1-P	Field mustard	cytosol, mitochondrion, nucleus	28.21	14.99
CDY22569	Canola	cytosol	29.23	12.61
CDY12276	Canola	cytosol	22.56	12.43
Bra023214.1-P	Field mustard	cytosol	20.0	7.07

Protein Annotations

EnsemblPlants:GSMUA_Achr4P30930_001	EnsemblPlants:GSMUA_Achr4T30930_001	EnsemblPlantsGene:GSMUA_Achr4G30930_001	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR036397	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797	PFAM:PF04857	SUPFAM:SSF53098	TMHMM:TMhelix
UniParc:UPI000294D018	UniProt:M0STK5	MapMan:35.1	:	:	:

Description

Putative CCR4-associated factor 1 homolog 8 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30930_001]

Coordinates

chr4:+:28300684..28301271

Molecular Weight (calculated)

22360.9 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.174

Length

195 amino acids

Sequence
(BLAST)

001: MAVTVVTENI AAQLDLLVDL HRSFRYAAID TEFPGFIQST PPYASEEDRY ADVKYNVDKM KLIQLGITLF DENGSTPWQG CCWQFNFSDF DPLVHPSSPK
101: SLELLRRSGH DLEGNQRNGI NGDKWSNVLR NKLFDRRYDS VYVTFHGLYD VAYVIMLITG GAPLPPTLRE FIVSIKSIIM LFVMRKNFNT KIEIK

Best Arabidopsis Sequence Match ( AT3G44240.1 )
(BLAST)

001: MSLIEDCLRS YRFIAIDTEF PSTLRETTQH ATDEERYMDM SFSVDRAKLI QLGLTLFDIN GRIGGTWEIN FSDFGVDDAR NEKSIEFLRR NGLDLRKIRE
101: EGIRIEGFFS EMFWMLKKTR RNITWVTFHG SYDIAYLLKG FTGEALPVTS ERFSKAVARV LGSVYDLKVM AGRCEGLSSR LGLETLAHEF GLNRVGTAHH
201: AGSNNELTAM VFAKVLSPFP LFLRFGSLEL RTIESEAIV

Arabidopsis Description

CAF1-8Putative CCR4-associated factor 1 homolog 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.