Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | GSMUA_Achr10P... | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P29700_001 | Banana | cytosol | 74.59 | 85.45 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 35.25 | 67.72 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 44.26 | 62.43 |
| CDY09125 | Canola | nucleus | 60.66 | 54.81 |
| CDY35673 | Canola | nucleus | 60.25 | 54.44 |
| Bra020179.1-P | Field mustard | nucleus | 59.84 | 54.07 |
| Bra035002.1-P | Field mustard | nucleus | 59.02 | 53.14 |
| CDY47299 | Canola | nucleus | 59.02 | 52.94 |
| AT5G22250.1 | Thale cress | cytosol | 60.25 | 52.88 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 60.25 | 52.88 |
| AT3G44260.1 | Thale cress | cytosol | 59.43 | 51.79 |
| KRH25294 | Soybean | nucleus | 58.61 | 51.44 |
| KRH30376 | Soybean | nucleus | 59.84 | 51.41 |
| CDX98586 | Canola | nucleus | 59.43 | 51.24 |
| CDY08688 | Canola | cytosol | 58.2 | 50.9 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 55.74 | 50.56 |
| CDX92371 | Canola | nucleus | 58.61 | 50.53 |
| Bra002400.1-P | Field mustard | nucleus | 57.79 | 50.18 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 54.51 | 49.44 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 54.51 | 49.44 |
| CDX88806 | Canola | cytosol | 57.38 | 49.12 |
| Bra006616.1-P | Field mustard | cytosol | 56.97 | 48.77 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 54.92 | 48.73 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 51.23 | 48.64 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 48.77 | 48.57 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 50.0 | 48.41 |
| PGSC0003DMT400042215 | Potato | plastid | 54.92 | 47.02 |
| Solyc01g007840.2.1 | Tomato | plastid | 54.1 | 46.32 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 57.79 | 45.63 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 58.2 | 45.51 |
| Zm00001d026657_P001 | Maize | cytosol | 55.33 | 45.15 |
| Zm00001d001774_P001 | Maize | nucleus | 54.51 | 44.78 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 46.72 | 44.02 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 45.49 | 43.19 |
| Os04t0684900-02 | Rice | nucleus | 57.38 | 42.55 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 52.87 | 39.45 |
| EES11684 | Sorghum | nucleus | 54.1 | 39.4 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 52.05 | 39.2 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 51.64 | 38.77 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 51.23 | 38.46 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 41.8 | 36.56 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 22.13 | 27.69 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 32.79 | 23.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P19450_001 | EnsemblPlants:GSMUA_Achr6T19450_001 | EnsemblPlantsGene:GSMUA_Achr6G19450_001 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI0002955127 | UniProt:M0T8E3 | MapMan:35.1 |
Description
Probable CCR4-associated factor 1 homolog 11 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19450_001]
Coordinates
chr6:+:13756947..13757967
Molecular Weight (calculated)
27303.6 Da
IEP (calculated)
6.120
GRAVY (calculated)
-0.136
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSLEAEKQP AQVQVRSVWA DNLEAEFDNI REAVERYPFA AMDTEFPGVV HRSRKHPAHL STAERYALLK ANVDDLHLIQ VGLTLSDAAG NLPDLCDDGG
101: NRARGIDSRH FAELLMSSGL VCNDSAVSWV TFHSAYDFAY LIKILTCRRL PEHLGGFMAL VRVFFGDKVF DMKHMMKYCH SLYGGLERVA SALEIDRAVG
201: RCHQAGSDSL LTWQAFRRMK ELFFVEDAGE KHAGVLYGLE VADP
101: NRARGIDSRH FAELLMSSGL VCNDSAVSWV TFHSAYDFAY LIKILTCRRL PEHLGGFMAL VRVFFGDKVF DMKHMMKYCH SLYGGLERVA SALEIDRAVG
201: RCHQAGSDSL LTWQAFRRMK ELFFVEDAGE KHAGVLYGLE VADP
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.