Factsheet for Os04t0684900-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

cytoskeleton: 24805883
nucleus: 24805883

gfp PMID: 24805883 doi

WL Chou, LF Huang, JC Fang, CH Yeh, CY Hong, SJ Wu, CA Lu

Department of Life Sciences, National Central University, Jhongli City, Taoyuan County, 320, Taiwan, ROC.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	Os04t0654700-02	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70991	Canola	cytosol, nucleus, plastid	24.01	62.2
Zm00001d001774_P001	Maize	nucleus	55.02	60.94
Zm00001d026657_P001	Maize	cytosol	54.71	60.2
GSMUA_Achr9P29700_001	Banana	cytosol	37.39	57.75
GSMUA_Achr6P19450_001	Banana	cytosol	42.55	57.38
TraesCS2A01G583000.1	Wheat	nucleus	55.32	56.17
TraesCS2B01G603600.1	Wheat	cytosol	55.32	56.0
HORVU2Hr1G123480.1	Barley	nucleus	54.71	55.38
TraesCS2D01G597200.1	Wheat	nucleus	54.71	55.05
EES11684	Sorghum	nucleus	55.93	54.93
GSMUA_Achr6P19460_001	Banana	cytosol	28.27	53.76
Bra020179.1-P	Field mustard	nucleus	43.16	52.59
CDY09125	Canola	nucleus	42.55	51.85
CDY35673	Canola	nucleus	42.25	51.48
CDY47299	Canola	nucleus	42.25	51.1
KRH25294	Soybean	nucleus	43.16	51.08
Bra035002.1-P	Field mustard	nucleus	41.95	50.92
Bra002400.1-P	Field mustard	nucleus	43.47	50.89
CDX92371	Canola	nucleus	43.77	50.88
VIT_06s0080g01090.t01	Wine grape	nucleus	42.86	50.72
AT5G22250.1	Thale cress	cytosol	42.55	50.36
CDX98586	Canola	nucleus	43.16	50.18
KRH30376	Soybean	nucleus	42.86	49.65
CDY08688	Canola	cytosol	41.95	49.46
AT3G44260.1	Thale cress	cytosol	41.64	48.93
Bra006616.1-P	Field mustard	cytosol	42.25	48.77
CDX88806	Canola	cytosol	42.25	48.77
PGSC0003DMT400042215	Potato	plastid	41.34	47.72
Solyc01g007840.2.1	Tomato	plastid	40.43	46.67
KRH26669	Soybean	endoplasmic reticulum, golgi	42.55	45.31
KRH22647	Soybean	endoplasmic reticulum, vacuole	42.55	44.87
Os09t0416800-01	Rice	cytosol	37.69	44.29
Os08t0440300-03	Rice	cytosol	34.95	39.93
Os02t0796300-01	Rice	cytosol	35.56	39.66
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	37.39	32.8
Os10t0128300-00	Rice	plastid	28.88	32.65
Os10t0124200-00	Rice	cytosol	27.66	30.85
Os10t0123900-00	Rice	extracellular, mitochondrion, nucleus	24.01	28.73
Os07t0169800-00	Rice	nucleus	39.51	26.0
Os06t0503900-01	Rice	cytosol, nucleus, plasma membrane	21.58	25.27

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:4337457	EMBL:AK111967	ProteinID:BAS91718.1	ProteinID:CAE03453.1
ProteinID:EAZ32473.1	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004535	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928
GO:GO:0090503	InterPro:IPR036397	EnsemblPlantsGene:Os04g0684900	EnsemblPlants:Os04t0684900-02	PFAM:PF04857	PANTHER:PTHR10797
PANTHER:PTHR10797:SF3	UniProt:Q7XPU5	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098
UniParc:UPI00001B1796	RefSeq:XP_015635906.1	SEG:seg	:	:	:

Description

CCR4-associated factor 1B, carbon cataboliterepressor 4-associated factor 1B, CCR4-associated factor 1-5Component of the CCR4-NOTcomplex, Deadenylase, Deadenylation (poly(A) tail shortening), Development and stress response (Os04t0684900-01);Component of the CCR4-NOTcomplex, Deadenylase, Component of the plant P-body, Deadenylation (poly(A) tail shortening), Development and stress response (Os04t0684900-02)

Coordinates

chr4:+:34980601..34981819

Molecular Weight (calculated)

36634.6 Da

IEP (calculated)

9.841

GRAVY (calculated)

-0.093

Length

329 amino acids

Sequence
(BLAST)

001: MPSEFVAARK KPPPELLFAA GRKKQQPPPP GMAFVPSEFA AAGVGRKRQP APPVEIRRVW AHNVEEEFRI IRNAIDHFPY VSMDTEFPGV IHRPTKHPAL
101: LTAGDRYDLL RRNVDALHLI QVGITLAASP TAAPALAFEI NLSDFDQRVH RHAAESVQLL AEHGVDLAAH RRHGVRASAL APLLMSSGLV CSHGAVKWVT
201: FHSAYDFAYL VKLLMGRKLP RSMAEFLNLV RVFFGDEVYD VKHMMRHCGG ELYGGLERVA AALQVKRAAG RCHQAASDSL LTWDVFRRMR ELYFLKHGVE
301: AYQGVLFGLE LDMDMPSNKT PSLPLVAAR

Best Arabidopsis Sequence Match ( AT5G22250.1 )
(BLAST)

001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF

Arabidopsis Description

CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.