Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0654700-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Os04t0654700-02 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 48.8 | 57.91 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 39.73 | 57.75 |
| TraesCSU01G062600.1 | Wheat | cytosol | 39.2 | 57.2 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 14.4 | 42.52 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 29.07 | 42.08 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 28.8 | 42.02 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 30.93 | 41.73 |
| CDY35673 | Canola | nucleus | 29.87 | 41.48 |
| CDY09125 | Canola | nucleus | 29.6 | 41.11 |
| Bra020179.1-P | Field mustard | nucleus | 29.33 | 40.74 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 47.2 | 40.5 |
| KRH25294 | Soybean | nucleus | 29.87 | 40.29 |
| AT5G22250.1 | Thale cress | cytosol | 29.6 | 39.93 |
| Bra035002.1-P | Field mustard | nucleus | 28.8 | 39.85 |
| CDY47299 | Canola | nucleus | 28.53 | 39.34 |
| Bra002400.1-P | Field mustard | nucleus | 29.33 | 39.15 |
| KRH30376 | Soybean | nucleus | 29.6 | 39.08 |
| CDX92371 | Canola | nucleus | 29.33 | 38.87 |
| AT3G44260.1 | Thale cress | cytosol | 28.8 | 38.57 |
| CDX98586 | Canola | nucleus | 29.07 | 38.52 |
| CDY08688 | Canola | cytosol | 28.53 | 38.35 |
| CDX88806 | Canola | cytosol | 28.8 | 37.89 |
| Bra006616.1-P | Field mustard | cytosol | 28.8 | 37.89 |
| Os04t0684900-02 | Rice | nucleus | 32.8 | 37.39 |
| Os02t0796300-01 | Rice | cytosol | 29.33 | 37.29 |
| Os09t0416800-01 | Rice | cytosol | 27.73 | 37.14 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 26.67 | 36.36 |
| PGSC0003DMT400042215 | Potato | plastid | 27.47 | 36.14 |
| Os08t0440300-03 | Rice | cytosol | 27.73 | 36.11 |
| Os10t0128300-00 | Rice | plastid | 28.0 | 36.08 |
| Solyc01g007840.2.1 | Tomato | plastid | 27.2 | 35.79 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 29.33 | 35.6 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 29.33 | 35.26 |
| Os10t0124200-00 | Rice | cytosol | 26.4 | 33.56 |
| Os07t0169800-00 | Rice | nucleus | 36.53 | 27.4 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 20.27 | 27.05 |
Protein Annotations
| EntrezGene:107275402 | Gene3D:3.30.420.10 | MapMan:35.1 | ProteinID:BAD68660.1 | ProteinID:BAS96057.1 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004535 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0090503 | InterPro:IPR036397 |
| EnsemblPlantsGene:Os06g0138400 | EnsemblPlants:Os06t0138400-00 | PFAM:PF04857 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF12 | UniProt:Q5VPG5 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI0000457F32 | RefSeq:XP_015642200.1 |
| SEG:seg | : | : | : | : | : |
Description
CCR4-associated factor 1-6, carbon catabolite repressor 4-associated factor 1-6, CCR4-associated factor 1D, carbon catabolite repressor 4-associated factor 1DHypothetical conserved gene. (Os06t0138400-00)
Coordinates
chr6:+:2036651..2037778
Molecular Weight (calculated)
39753.6 Da
IEP (calculated)
8.355
GRAVY (calculated)
-0.048
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPRTPPPTS PPLDDDDANE TRRRVAIAGA ASSPPPPRPA MPMFPGDVGP VMLAPPPPLP FFPIAAVQSG LGFMHMSAPP EIVTARSKLN SDAPSFSPRS
101: PAASAAADEV EVRDVWAANL EEELRSIGAL LPTYPVVSMD TEFPGTVHDV ATPRHLRTPR ESYAVVKRNV DELHLLQLGL ALSGPAGRCP VAWQFNFAGF
201: DARRDPHSGS SVAMLAAHGV DFTALRRHGI DHGDFARAFG RSKLACGRLT WAAFSGSYDF AYLVKVLTGG RPLPSTLEGF MAKVSKIFGP AVLDVKHLAK
301: FCGGGGGIRG GLEHVAAALG VHRAAGRAHN AGSDSLLTSD VLHAMVDRFF PNSGVLNHAG AIDGLVKCSN LYYKY
101: PAASAAADEV EVRDVWAANL EEELRSIGAL LPTYPVVSMD TEFPGTVHDV ATPRHLRTPR ESYAVVKRNV DELHLLQLGL ALSGPAGRCP VAWQFNFAGF
201: DARRDPHSGS SVAMLAAHGV DFTALRRHGI DHGDFARAFG RSKLACGRLT WAAFSGSYDF AYLVKVLTGG RPLPSTLEGF MAKVSKIFGP AVLDVKHLAK
301: FCGGGGGIRG GLEHVAAALG VHRAAGRAHN AGSDSLLTSD VLHAMVDRFF PNSGVLNHAG AIDGLVKCSN LYYKY
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
Arabidopsis Description
CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.