Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0654700-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Os04t0654700-02 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES09326 | Sorghum | mitochondrion, nucleus | 44.41 | 43.96 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 16.27 | 37.8 |
| Bra020179.1-P | Field mustard | nucleus | 32.2 | 35.19 |
| CDY09125 | Canola | nucleus | 31.86 | 34.81 |
| CDY35673 | Canola | nucleus | 31.53 | 34.44 |
| CDX92371 | Canola | nucleus | 32.88 | 34.28 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 31.86 | 34.18 |
| AT5G22250.1 | Thale cress | cytosol | 31.86 | 33.81 |
| Bra002400.1-P | Field mustard | nucleus | 31.86 | 33.45 |
| CDX98586 | Canola | nucleus | 31.86 | 33.22 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 31.19 | 33.09 |
| Bra035002.1-P | Field mustard | nucleus | 30.17 | 32.84 |
| KRH25294 | Soybean | nucleus | 30.85 | 32.73 |
| CDY47299 | Canola | nucleus | 30.17 | 32.72 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 28.47 | 32.43 |
| KRH30376 | Soybean | nucleus | 31.19 | 32.39 |
| CDX88806 | Canola | cytosol | 31.19 | 32.28 |
| AT3G44260.1 | Thale cress | cytosol | 30.51 | 32.14 |
| Os10t0128300-00 | Rice | plastid | 31.53 | 31.96 |
| Bra006616.1-P | Field mustard | cytosol | 30.85 | 31.93 |
| Os09t0416800-01 | Rice | cytosol | 30.17 | 31.79 |
| CDY08688 | Canola | cytosol | 29.83 | 31.54 |
| PGSC0003DMT400042215 | Potato | plastid | 29.83 | 30.88 |
| Os02t0796300-01 | Rice | cytosol | 30.85 | 30.85 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 32.2 | 30.74 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 26.78 | 30.74 |
| Solyc01g007840.2.1 | Tomato | plastid | 28.81 | 29.82 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 30.51 | 28.85 |
| Os08t0440300-03 | Rice | cytosol | 27.46 | 28.12 |
| Os04t0684900-02 | Rice | nucleus | 30.85 | 27.66 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 33.56 | 26.4 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 19.32 | 20.28 |
| Os07t0169800-00 | Rice | nucleus | 32.2 | 19.0 |
Protein Annotations
| EntrezGene:107275543 | Gene3D:3.30.420.10 | MapMan:35.1 | ProteinID:AAK52523.1 | ProteinID:AAN04516.1 | ProteinID:AAP51947.1 |
| ProteinID:BAT09708.1 | ProteinID:EAZ15164.1 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 |
| GO:GO:0043928 | GO:GO:0090503 | InterPro:IPR036397 | EnsemblPlantsGene:Os10g0124200 | EnsemblPlants:Os10t0124200-00 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF6 | UniProt:Q7G606 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SUPFAM:SSF53098 | UniParc:UPI00000ABC57 |
| RefSeq:XP_015613503.1 | SEG:seg | : | : | : | : |
Description
CCR4-associated factor 1-15, carbon catabolite repressor 4-associated factor 1-15, CCR4-associated factor 1I, carbon catabolite repressor 4-associated factor 1ISimilar to CAF1 family ribonuclease containing protein. (Os10t0124200-00)
Coordinates
chr10:+:1539462..1540349
Molecular Weight (calculated)
31971.6 Da
IEP (calculated)
9.102
GRAVY (calculated)
0.012
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATQPVSEV LIRRVTADNL AVEMLTIRSH LPYFPYITIH ADYPVDNAAA RHGRRRRRRR GGGRGNKRES EADERCYRLA KSRVDELDVL QLGITLCDHH
101: GRLPATAIAC PGGAAVAVEM AWQVGFSDFD VSQSAVDALR AAGVDLEHLR ARGVPAAVFG QALRVFDIVS AANLGRLTWV AFGGLYDFGF LLKMLDGGRP
201: LPETAEGFAS RLRGHLGVVY DAKYVAARLP MDGVELRGGL VRVARVLGAP AAAVEEPRQA GEKSLVASQV FIRMTGLFFA YHDVAVHAGK IDGLE
101: GRLPATAIAC PGGAAVAVEM AWQVGFSDFD VSQSAVDALR AAGVDLEHLR ARGVPAAVFG QALRVFDIVS AANLGRLTWV AFGGLYDFGF LLKMLDGGRP
201: LPETAEGFAS RLRGHLGVVY DAKYVAARLP MDGVELRGGL VRVARVLGAP AAAVEEPRQA GEKSLVASQV FIRMTGLFFA YHDVAVHAGK IDGLE
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
Arabidopsis Description
CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.