Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0654700-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Os04t0654700-02 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 34.02 | 36.0 |
| Os09t0416800-01 | Rice | cytosol | 31.96 | 33.21 |
| Bra035002.1-P | Field mustard | nucleus | 30.93 | 33.21 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 29.55 | 33.2 |
| CDY47299 | Canola | nucleus | 30.93 | 33.09 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 29.21 | 33.07 |
| Bra020179.1-P | Field mustard | nucleus | 30.24 | 32.59 |
| CDY08688 | Canola | cytosol | 30.93 | 32.26 |
| CDY35673 | Canola | nucleus | 29.9 | 32.22 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 30.58 | 32.01 |
| PGSC0003DMT400042215 | Potato | plastid | 31.27 | 31.93 |
| CDY09125 | Canola | nucleus | 29.55 | 31.85 |
| Solyc01g007840.2.1 | Tomato | plastid | 30.93 | 31.58 |
| Os10t0124200-00 | Rice | cytosol | 31.96 | 31.53 |
| AT3G44260.1 | Thale cress | cytosol | 30.24 | 31.43 |
| Bra002400.1-P | Field mustard | nucleus | 30.24 | 31.32 |
| Os02t0796300-01 | Rice | cytosol | 31.62 | 31.19 |
| CDX92371 | Canola | nucleus | 30.24 | 31.1 |
| AT5G22250.1 | Thale cress | cytosol | 29.55 | 30.94 |
| KRH25294 | Soybean | nucleus | 29.55 | 30.94 |
| CDX98586 | Canola | nucleus | 29.9 | 30.74 |
| KRH30376 | Soybean | nucleus | 29.55 | 30.28 |
| CDX88806 | Canola | cytosol | 29.55 | 30.18 |
| Bra006616.1-P | Field mustard | cytosol | 29.21 | 29.82 |
| Os08t0440300-03 | Rice | cytosol | 29.21 | 29.51 |
| Os04t0684900-02 | Rice | nucleus | 32.65 | 28.88 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 29.9 | 28.16 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 36.08 | 28.0 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 29.9 | 27.88 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 11.34 | 25.98 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 22.68 | 23.49 |
| Os07t0169800-00 | Rice | nucleus | 35.05 | 20.4 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | ProteinID:AAM08752.1 | ProteinID:AAP51972.1 | ProteinID:BAT09741.1 | ProteinID:EAZ15185.1 |
| GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004535 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0090503 |
| InterPro:IPR036397 | EnsemblPlantsGene:Os10g0128300 | EnsemblPlants:Os10t0128300-00 | PFAM:PF04857 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF9 |
| UniProt:Q8S804 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI00000A0DFA |
| SEG:seg | : | : | : | : | : |
Description
CCR4-associated factor 1-16, carbon catabolite repressor 4-associated factor 1-16, CCR4-associated factor 1E, carbon catabolite repressor 4-associated factor 1ERibonuclease CAF1 domain containing protein. (Os10t0128300-00)
Coordinates
chr10:+:1766346..1767221
Molecular Weight (calculated)
31334.2 Da
IEP (calculated)
9.211
GRAVY (calculated)
0.203
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASSSSSMA SSQPRMMEQS LFYTQPPARA VHTRKVTAVN LHREMSLIRS LMPTFPFVAV DTQFPGVVHP HPRGAGVTAD DRYAAVRANA DELCLLQLGI
101: TLSAADGRLP VDGALVEFMW DFDFAGFDAR YHRHAPESVQ FLRAQGFDFE AARLAGVPAL AFAAELAASG ILGLRGVTWV AFGGMYDVAF LLRLATGGAP
201: LPATRLGFLA QVGAVFGTQV FDAKHMASLL HMHGGLAAVG GMLRLPPQLP RRHMAGQNSV MAIQLFMELR RRFNDLGGSL HSCSLKIEGL T
101: TLSAADGRLP VDGALVEFMW DFDFAGFDAR YHRHAPESVQ FLRAQGFDFE AARLAGVPAL AFAAELAASG ILGLRGVTWV AFGGMYDVAF LLRLATGGAP
201: LPATRLGFLA QVGAVFGTQV FDAKHMASLL HMHGGLAAVG GMLRLPPQLP RRHMAGQNSV MAIQLFMELR RRFNDLGGSL HSCSLKIEGL T
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.