Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47299 | Canola | nucleus | 84.64 | 87.13 |
| Bra035002.1-P | Field mustard | nucleus | 84.29 | 87.08 |
| CDY08688 | Canola | cytosol | 84.64 | 84.95 |
| AT5G22250.1 | Thale cress | cytosol | 77.5 | 78.06 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 73.57 | 74.1 |
| KRH25294 | Soybean | nucleus | 68.57 | 69.06 |
| KRH30376 | Soybean | nucleus | 69.29 | 68.31 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 68.93 | 62.46 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 46.79 | 61.5 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 66.79 | 59.94 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 51.79 | 59.43 |
| Solyc01g007840.2.1 | Tomato | plastid | 60.0 | 58.95 |
| PGSC0003DMT400042215 | Potato | plastid | 59.29 | 58.25 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 35.36 | 57.23 |
| AT5G10960.1 | Thale cress | nucleus | 51.43 | 51.99 |
| AT2G32070.1 | Thale cress | nucleus | 50.36 | 51.27 |
| AT1G80780.3 | Thale cress | cytosol | 48.57 | 47.55 |
| AT1G15920.2 | Thale cress | nucleus | 47.5 | 46.5 |
| Zm00001d026657_P001 | Maize | cytosol | 48.21 | 45.15 |
| Zm00001d001774_P001 | Maize | nucleus | 46.79 | 44.11 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 38.93 | 42.08 |
| Os04t0684900-02 | Rice | nucleus | 48.93 | 41.64 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 37.86 | 41.25 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 46.43 | 39.76 |
| EES11684 | Sorghum | nucleus | 47.5 | 39.7 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 46.07 | 39.69 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 45.71 | 39.51 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 45.71 | 39.38 |
| TraesCSU01G062600.1 | Wheat | cytosol | 35.71 | 38.91 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 35.0 | 37.98 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 16.43 | 35.38 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 16.43 | 35.38 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 16.43 | 35.38 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 17.14 | 35.04 |
| AT3G44240.1 | Thale cress | cytosol | 29.64 | 34.73 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 21.07 | 33.91 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 33.21 | 33.82 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 24.64 | 33.5 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 31.43 | 33.21 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 31.07 | 32.95 |
| EES10179 | Sorghum | plasma membrane, plastid | 32.86 | 32.74 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 36.79 | 32.59 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 29.29 | 31.18 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 29.29 | 31.18 |
| Os10t0124200-00 | Rice | cytosol | 32.14 | 30.51 |
| Os10t0128300-00 | Rice | plastid | 31.43 | 30.24 |
| AT1G61470.1 | Thale cress | nucleus | 30.0 | 30.22 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 31.07 | 30.21 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 31.43 | 30.14 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 31.43 | 30.03 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 31.43 | 29.93 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 31.43 | 29.93 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 31.07 | 29.79 |
| KXG20050 | Sorghum | plastid | 28.21 | 29.37 |
| Zm00001d002885_P001 | Maize | plastid | 33.21 | 29.15 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 31.07 | 29.0 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 29.29 | 28.98 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 28.93 | 28.83 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 38.57 | 28.8 |
| TraesCS6D01G318000.1 | Wheat | plastid | 28.93 | 28.62 |
| OQU83919 | Sorghum | mitochondrion | 24.29 | 27.87 |
| TraesCS4A01G243900.1 | Wheat | plastid | 28.93 | 26.91 |
| TraesCS4A01G243700.1 | Wheat | plastid | 28.57 | 26.85 |
| TraesCS4B01G071200.1 | Wheat | plastid | 28.57 | 26.58 |
| TraesCS4A01G243800.1 | Wheat | plastid | 27.86 | 26.17 |
| AT1G27890.1 | Thale cress | cytosol | 28.21 | 26.16 |
| TraesCS4D01G069900.1 | Wheat | plastid | 28.21 | 26.16 |
| AT1G06450.1 | Thale cress | cytosol | 33.57 | 26.11 |
| TraesCS4B01G071000.1 | Wheat | plastid | 27.5 | 26.1 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 27.86 | 26.09 |
| TraesCS4B01G071100.1 | Wheat | plastid | 27.86 | 25.83 |
| AT1G27820.1 | Thale cress | cytosol | 28.21 | 25.48 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 39.29 | 25.17 |
| EES09326 | Sorghum | mitochondrion, nucleus | 26.79 | 25.17 |
| OQU76452 | Sorghum | plastid | 14.29 | 24.54 |
| TraesCS3B01G445400.1 | Wheat | plastid | 28.93 | 24.47 |
| KXG22837 | Sorghum | mitochondrion | 29.64 | 23.99 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 16.07 | 23.94 |
| Os07t0169800-00 | Rice | nucleus | 42.5 | 23.8 |
| KXG38897 | Sorghum | plastid | 27.86 | 22.87 |
| Zm00001d029981_P001 | Maize | plastid | 29.29 | 22.1 |
| OQU76454 | Sorghum | plastid | 15.71 | 21.67 |
| Zm00001d031508_P001 | Maize | cytosol | 29.29 | 20.81 |
| Zm00001d007893_P001 | Maize | nucleus | 34.64 | 19.44 |
| EER98038 | Sorghum | plastid | 38.21 | 18.58 |
| OQU76453 | Sorghum | plastid | 16.07 | 14.95 |
Protein Annotations
| MapMan:16.8.2.1.2.2 | Gene3D:3.30.420.10 | EntrezGene:823551 | ProteinID:AEE77882.1 | ArrayExpress:AT3G44260 | EnsemblPlantsGene:AT3G44260 |
| RefSeq:AT3G44260 | TAIR:AT3G44260 | RefSeq:AT3G44260-TAIR-G | EnsemblPlants:AT3G44260.1 | TAIR:AT3G44260.1 | EMBL:AY050848 |
| EMBL:AY117220 | ProteinID:CAB88994.1 | GO:GO:0000289 | GO:GO:0000932 | GO:GO:0002213 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004527 | GO:GO:0004535 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009611 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 |
| GO:GO:0042742 | GO:GO:0043928 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090503 | InterPro:IPR036397 |
| RefSeq:NP_190012.1 | PFAM:PF04857 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 | UniProt:Q9LXM2 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI00000A8BFB | SEG:seg | : | : |
Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
Coordinates
chr3:-:15952008..15953346
Molecular Weight (calculated)
32234.5 Da
IEP (calculated)
4.754
GRAVY (calculated)
-0.203
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.