Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G071000.1 | Wheat | plastid | 91.36 | 93.22 |
| TraesCS4B01G071100.1 | Wheat | plastid | 92.69 | 92.38 |
| TraesCS4D01G069900.1 | Wheat | plastid | 90.7 | 90.4 |
| TraesCS4A01G243900.1 | Wheat | plastid | 89.7 | 89.7 |
| TraesCS4A01G243800.1 | Wheat | plastid | 88.7 | 89.6 |
| TraesCS4A01G243700.1 | Wheat | plastid | 87.04 | 87.92 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 43.85 | 64.08 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 60.8 | 61.2 |
| TraesCS3B01G445400.1 | Wheat | plastid | 62.79 | 57.1 |
| KXG20050 | Sorghum | plastid | 40.86 | 45.72 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 37.87 | 43.35 |
| KXG38897 | Sorghum | plastid | 48.84 | 43.11 |
| OQU76452 | Sorghum | plastid | 22.92 | 42.33 |
| Zm00001d029981_P001 | Maize | plastid | 48.17 | 39.08 |
| OQU76454 | Sorghum | plastid | 21.59 | 32.02 |
| Bra020179.1-P | Field mustard | nucleus | 27.57 | 30.74 |
| PGSC0003DMT400042215 | Potato | plastid | 28.9 | 30.53 |
| CDY35673 | Canola | nucleus | 27.24 | 30.37 |
| CDY09125 | Canola | nucleus | 27.24 | 30.37 |
| KRH30376 | Soybean | nucleus | 28.24 | 29.93 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 12.62 | 29.92 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 27.24 | 29.5 |
| AT5G22250.1 | Thale cress | cytosol | 27.24 | 29.5 |
| KRH25294 | Soybean | nucleus | 27.24 | 29.5 |
| Solyc01g007840.2.1 | Tomato | plastid | 27.91 | 29.47 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 27.24 | 29.39 |
| Bra035002.1-P | Field mustard | nucleus | 26.25 | 29.15 |
| CDX88806 | Canola | cytosol | 27.57 | 29.12 |
| Bra006616.1-P | Field mustard | cytosol | 27.57 | 29.12 |
| CDY47299 | Canola | nucleus | 26.25 | 29.04 |
| CDX98586 | Canola | nucleus | 26.91 | 28.62 |
| AT3G44260.1 | Thale cress | cytosol | 26.58 | 28.57 |
| CDX92371 | Canola | nucleus | 26.25 | 27.92 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 23.92 | 27.8 |
| Bra002400.1-P | Field mustard | nucleus | 25.91 | 27.76 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.59 | 27.63 |
| CDY08688 | Canola | cytosol | 25.58 | 27.6 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 26.91 | 27.55 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 29.57 | 27.38 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 26.25 | 27.34 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 27.57 | 26.6 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 26.91 | 26.21 |
| OQU76453 | Sorghum | plastid | 24.92 | 24.92 |
| TraesCS4B01G078100.1 | Wheat | cytosol, plastid | 24.25 | 7.74 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G071200.1 | EnsemblPlantsGene:TraesCS4B01G071200 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4B:-:65644086..65644991
Molecular Weight (calculated)
33067.7 Da
IEP (calculated)
9.046
GRAVY (calculated)
-0.172
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPAAGMFPM FPPPPPLPFH YAFPMQPPPY FYHAPMSPVW PSSAVPVRSV WASNFKHESA NLRHVASRAQ YVAVNVHYPG VVHHPSQDHN ALTVEERYAL
101: VKANVDDLKP LQVGIALYDS DGGYLDAWEF NLRDFRPQAD PHDENSLAYL AGRGLDVGAL RDHGVSADML DKKLFESGLV GARRGRSRSW ITYAGAYHVA
201: YLLKIVTGGA PLPRDVAGFN GAVRRYLGDQ VYDVATMAAG CPAMPLGLEH IADYLGFHPP LGSPRLAAAA GVRTLQVFMR LKYGELGGDV RRYRGLLKGL
301: H
101: VKANVDDLKP LQVGIALYDS DGGYLDAWEF NLRDFRPQAD PHDENSLAYL AGRGLDVGAL RDHGVSADML DKKLFESGLV GARRGRSRSW ITYAGAYHVA
201: YLLKIVTGGA PLPRDVAGFN GAVRRYLGDQ VYDVATMAAG CPAMPLGLEH IADYLGFHPP LGSPRLAAAA GVRTLQVFMR LKYGELGGDV RRYRGLLKGL
301: H
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.