Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | CDY25761 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035002.1-P | Field mustard | nucleus | 97.79 | 98.16 |
| CDY08688 | Canola | cytosol | 96.32 | 93.91 |
| AT3G44260.1 | Thale cress | cytosol | 87.13 | 84.64 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 38.97 | 83.46 |
| CDY35673 | Canola | nucleus | 81.62 | 82.22 |
| CDY09125 | Canola | nucleus | 81.25 | 81.85 |
| CDX92371 | Canola | nucleus | 81.99 | 78.8 |
| CDX98586 | Canola | nucleus | 81.99 | 78.8 |
| CDX88806 | Canola | cytosol | 79.04 | 75.44 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 75.74 | 74.1 |
| KRH25294 | Soybean | nucleus | 70.96 | 69.42 |
| KRH30376 | Soybean | nucleus | 70.22 | 67.25 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 70.59 | 62.14 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 47.79 | 61.03 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 69.49 | 60.58 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 52.94 | 59.02 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 37.13 | 58.38 |
| Solyc01g007840.2.1 | Tomato | plastid | 60.29 | 57.54 |
| PGSC0003DMT400042215 | Potato | plastid | 59.93 | 57.19 |
| CDY64914 | Canola | nucleus | 52.94 | 52.17 |
| CDY12234 | Canola | nucleus | 52.57 | 51.81 |
| CDX70376 | Canola | nucleus | 51.1 | 50.36 |
| CDX69796 | Canola | nucleus | 51.47 | 50.36 |
| CDX78405 | Canola | nucleus | 51.47 | 50.36 |
| CDX97069 | Canola | nucleus | 51.1 | 49.64 |
| CDY35049 | Canola | nucleus | 50.37 | 49.64 |
| CDY53227 | Canola | nucleus | 49.63 | 49.27 |
| CDY63973 | Canola | nucleus | 49.63 | 49.27 |
| CDX87343 | Canola | cytosol | 49.26 | 48.73 |
| CDY39943 | Canola | cytosol | 49.26 | 48.73 |
| Zm00001d026657_P001 | Maize | cytosol | 50.0 | 45.48 |
| Zm00001d001774_P001 | Maize | nucleus | 48.53 | 44.44 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 40.81 | 42.86 |
| Os04t0684900-02 | Rice | nucleus | 51.1 | 42.25 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 39.71 | 42.02 |
| EES11684 | Sorghum | nucleus | 49.26 | 40.0 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 47.79 | 39.76 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 47.06 | 39.51 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 47.06 | 39.38 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 47.06 | 39.38 |
| TraesCSU01G062600.1 | Wheat | cytosol | 36.4 | 38.52 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 36.4 | 38.37 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 17.65 | 36.92 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 17.65 | 36.92 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 17.65 | 36.92 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 18.38 | 36.5 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 34.93 | 34.55 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 21.32 | 33.33 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 31.99 | 32.83 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 31.62 | 32.58 |
| EES10179 | Sorghum | plasma membrane, plastid | 33.46 | 32.38 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 37.5 | 32.28 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 24.26 | 32.04 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 33.82 | 31.51 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 33.82 | 31.29 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 33.82 | 31.29 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 30.15 | 31.18 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 33.46 | 31.16 |
| Os10t0128300-00 | Rice | plastid | 33.09 | 30.93 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 29.78 | 30.8 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 33.09 | 30.72 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 31.99 | 30.21 |
| Os10t0124200-00 | Rice | cytosol | 32.72 | 30.17 |
| CDY33367 | Canola | cytosol, extracellular | 49.63 | 29.74 |
| CDY12236 | Canola | cytosol, extracellular | 44.12 | 29.13 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 30.15 | 28.98 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 39.34 | 28.53 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 29.41 | 28.47 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 31.25 | 28.33 |
| TraesCS6D01G318000.1 | Wheat | plastid | 29.41 | 28.27 |
| KXG20050 | Sorghum | plastid | 27.94 | 28.25 |
| OQU83919 | Sorghum | mitochondrion | 25.0 | 27.87 |
| Zm00001d002885_P001 | Maize | plastid | 31.99 | 27.27 |
| TraesCS4A01G243700.1 | Wheat | plastid | 29.41 | 26.85 |
| TraesCS4A01G243900.1 | Wheat | plastid | 29.41 | 26.58 |
| TraesCS4B01G071000.1 | Wheat | plastid | 28.68 | 26.44 |
| TraesCS4B01G071200.1 | Wheat | plastid | 29.04 | 26.25 |
| EES09326 | Sorghum | mitochondrion, nucleus | 28.68 | 26.17 |
| TraesCS4A01G243800.1 | Wheat | plastid | 28.68 | 26.17 |
| CDY26919 | Canola | cytosol | 30.88 | 26.09 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 28.68 | 26.09 |
| CDX73277 | Canola | cytosol | 30.88 | 26.01 |
| TraesCS4B01G071100.1 | Wheat | plastid | 28.68 | 25.83 |
| TraesCS4D01G069900.1 | Wheat | plastid | 28.68 | 25.83 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 40.44 | 25.17 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 33.46 | 24.8 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 33.46 | 24.8 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 33.82 | 24.4 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 16.54 | 23.94 |
| OQU76452 | Sorghum | plastid | 14.34 | 23.93 |
| TraesCS3B01G445400.1 | Wheat | plastid | 29.04 | 23.87 |
| Os07t0169800-00 | Rice | nucleus | 43.75 | 23.8 |
| KXG22837 | Sorghum | mitochondrion | 30.15 | 23.7 |
| KXG38897 | Sorghum | plastid | 29.41 | 23.46 |
| Zm00001d029981_P001 | Maize | plastid | 29.78 | 21.83 |
| OQU76454 | Sorghum | plastid | 16.18 | 21.67 |
| Zm00001d031508_P001 | Maize | cytosol | 30.88 | 21.32 |
| CDY12276 | Canola | cytosol | 26.47 | 20.34 |
| Zm00001d007893_P001 | Maize | nucleus | 36.76 | 20.04 |
| CDY22569 | Canola | cytosol | 33.09 | 19.91 |
| EER98038 | Sorghum | plastid | 39.71 | 18.75 |
| OQU76453 | Sorghum | plastid | 16.18 | 14.62 |
| CDX83963 | Canola | cytosol | 0.0 | 0.0 |
| CDX96828 | Canola | cytosol | 0.0 | 0.0 |
| CDY70980 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY47299 | EnsemblPlantsGene:GSBRNA2T00087127001 | Gene3D:3.30.420.10 | GO:A0A078ID64 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | ProteinID:CDY47299 | ProteinID:CDY47299.1 | SUPFAM:SSF53098 | UniParc:UPI0003E70147 |
| UniProt:A0A078ID64 | MapMan:16.8.2.1.2.2 | : | : | : | : |
Description
BnaA06g38950DBnaA06g38950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ID64]
Coordinates
chrLK032707:-:5112..6087
Molecular Weight (calculated)
31261.3 Da
IEP (calculated)
4.887
GRAVY (calculated)
-0.242
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTIINSGGA IAIREVWAEN LESEFELISG IIDDYPFVSM DTEFPGVIFK SDLRRGNPAD LYRLLKSNVD ALSLIQVGLT LSDADGNLPD LGDGRRFIWE
101: FNFKDFDVAR DAHAPDSIEL LRRQGIDFER NRRDGVDSER FAELMMSSGL VCNEEVSWVT FHSAYDFAYL MKILTRRELP CALGEFQRVM RALFGERVYD
201: MKHMMRFCER KLYGGLDRVA RTLEVNREVG KCHQAGSDSL LTWHAFQRMR DLYFLQDGPE KHAGVLYGLE VF
101: FNFKDFDVAR DAHAPDSIEL LRRQGIDFER NRRDGVDSER FAELMMSSGL VCNEEVSWVT FHSAYDFAYL MKILTRRELP CALGEFQRVM RALFGERVYD
201: MKHMMRFCER KLYGGLDRVA RTLEVNREVG KCHQAGSDSL LTWHAFQRMR DLYFLQDGPE KHAGVLYGLE VF
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.