CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09974	Canola	cytosol, mitochondrion, nucleus	97.08	99.73
CDY06214	Canola	cytosol, mitochondrion, nucleus	95.49	98.09
AT1G06450.1	Thale cress	cytosol	63.93	66.94
CDX70991	Canola	cytosol, nucleus, plastid	12.2	36.22
CDX87343	Canola	cytosol	25.2	34.55
CDY63973	Canola	nucleus	24.93	34.31
CDY53227	Canola	nucleus	24.93	34.31
CDY39943	Canola	cytosol	24.93	34.18
CDY09125	Canola	nucleus	24.4	34.07
CDY35673	Canola	nucleus	24.4	34.07
CDY64914	Canola	nucleus	24.93	34.06
CDX98586	Canola	nucleus	25.46	33.92
CDY47299	Canola	nucleus	24.4	33.82
CDY12234	Canola	nucleus	24.67	33.7
CDX92371	Canola	nucleus	24.67	32.86
CDY08688	Canola	cytosol	24.14	32.62
CDX88806	Canola	cytosol	24.4	32.28
CDX69796	Canola	nucleus	23.34	31.65
CDX97069	Canola	nucleus	23.34	31.43
CDY26919	Canola	cytosol	26.79	31.37
CDX73277	Canola	cytosol	26.79	31.27
CDX70376	Canola	nucleus	22.81	31.16
CDX78405	Canola	nucleus	22.81	30.94
CDY35049	Canola	nucleus	22.55	30.8
GSMUA_Achr4P30930_001	Banana	cytosol	15.12	29.23
GSMUA_Achr4P30910_001	Banana	nucleus	24.14	26.92
CDY12276	Canola	cytosol	23.61	25.14
CDY22569	Canola	cytosol	29.18	24.34
CDY12236	Canola	cytosol, extracellular	23.08	21.12
CDY33367	Canola	cytosol, extracellular	24.14	20.04
CDX96828	Canola	cytosol	0.27	0.83
CDX83963	Canola	cytosol	0.27	0.83
CDY70980	Canola	cytosol	0.27	0.83

Protein Annotations

EnsemblPlants:CDY09972	EnsemblPlantsGene:GSBRNA2T00031745001	Gene3D:3.30.420.10	GO:A0A078FAB6	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PANTHER:PTHR10797:SF16	PFAM:PF04857	ProteinID:CDY09972	ProteinID:CDY09972.1	SEG:seg	SUPFAM:SSF53098
UniParc:UPI0004EF0CD8	UniProt:A0A078FAB6	MapMan:35.1	:	:	:

Description

BnaC08g44790DBnaC08g44790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAB6]

Coordinates

chrLK032000:-:294644..296064

Molecular Weight (calculated)

42994.5 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.213

Length

377 amino acids

Sequence
(BLAST)

001: MNVNHHHRLG PVPWTRTVWA ENVDQELACL KECLKLYPKI AFDTEYPGIM HRTYLHSSDD DCYKTMKVNV ESSKLIQCGF TLFFHIQSKA YMFNAKGEIG
101: GVWEINFSNF GDPSDTRNEN SIDFLKKHGV DLNKIRNEGV DMFKYNFFPK LLSALYSQKH VDHVEFVTFQ GAYDFAYVLS ILNYGKLPET RGEFASEVVR
201: VFGEVYDLKV MAGYCDGLGE HLGLSKLAQL LNIPRVGRAH HAGSDSLMTA LVFIKLRHVF EDSKFAKGML YGIGKRMMVT ATTTTATMTS SVSMPMMCQQ
301: NLVSYPSSDM IFHNGYMPSY DHNNQVLFWN HLAVPWMSYD NGMYVNQLNH VPSSTFAYPY QAPYAADYLG QLPDLLQ

Best Arabidopsis Sequence Match ( AT1G06450.1 )
(BLAST)

001: MNEIHQPLAR RVWRSNVDEE MARMAECLKR FPLIAFDTEY PGIIFRTYFD SSSDECYRAM KGNVENTKLI QCGFTLFNAK GEIGGVWEIN FSNFGDPSDT
101: RNELSIEFLR RHGLDLQKIR DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV KVFGQVYDTK VMAGFCEGLG
201: EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL
301: VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE

Arabidopsis Description

CAF1-1Probable CCR4-associated factor 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.