Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 97.82 | 97.82 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 99.73 | 97.08 |
| AT1G06450.1 | Thale cress | cytosol | 65.4 | 66.67 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 12.53 | 36.22 |
| CDX87343 | Canola | cytosol | 25.61 | 34.18 |
| CDY63973 | Canola | nucleus | 25.34 | 33.94 |
| CDY53227 | Canola | nucleus | 25.34 | 33.94 |
| CDY39943 | Canola | cytosol | 25.34 | 33.82 |
| CDY09125 | Canola | nucleus | 24.8 | 33.7 |
| CDY35673 | Canola | nucleus | 24.8 | 33.7 |
| CDY64914 | Canola | nucleus | 25.34 | 33.7 |
| CDX98586 | Canola | nucleus | 25.89 | 33.57 |
| CDY47299 | Canola | nucleus | 24.8 | 33.46 |
| CDY12234 | Canola | nucleus | 25.07 | 33.33 |
| CDX92371 | Canola | nucleus | 25.07 | 32.51 |
| CDY08688 | Canola | cytosol | 24.52 | 32.26 |
| CDX88806 | Canola | cytosol | 24.8 | 31.93 |
| CDX69796 | Canola | nucleus | 23.71 | 31.3 |
| CDX97069 | Canola | nucleus | 23.71 | 31.07 |
| CDY26919 | Canola | cytosol | 27.25 | 31.06 |
| CDX73277 | Canola | cytosol | 27.25 | 30.96 |
| CDX70376 | Canola | nucleus | 23.16 | 30.8 |
| CDX78405 | Canola | nucleus | 23.16 | 30.58 |
| CDY35049 | Canola | nucleus | 22.89 | 30.43 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 15.26 | 28.72 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 24.52 | 26.63 |
| CDY12276 | Canola | cytosol | 23.98 | 24.86 |
| CDY22569 | Canola | cytosol | 29.7 | 24.11 |
| CDY12236 | Canola | cytosol, extracellular | 23.43 | 20.87 |
| CDY33367 | Canola | cytosol, extracellular | 24.52 | 19.82 |
| CDX96828 | Canola | cytosol | 0.27 | 0.83 |
| CDX83963 | Canola | cytosol | 0.27 | 0.83 |
| CDY70980 | Canola | cytosol | 0.27 | 0.83 |
Protein Annotations
| EnsemblPlants:CDY09974 | EnsemblPlantsGene:GSBRNA2T00031747001 | Gene3D:3.30.420.10 | GO:A0A078FAC2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF16 | PFAM:PF04857 | ProteinID:CDY09974 | ProteinID:CDY09974.1 | SEG:seg | SUPFAM:SSF53098 |
| UniParc:UPI0004EEC992 | UniProt:A0A078FAC2 | MapMan:35.1 | : | : | : |
Description
BnaC08g44770DBnaC08g44770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAC2]
Coordinates
chrLK032000:-:302859..303962
Molecular Weight (calculated)
41713.9 Da
IEP (calculated)
6.716
GRAVY (calculated)
-0.215
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVNHHHRLG PVPWTRTVWA ENVDQELACL KECLKLYPKI AFDTEYPGIM HRTYLHSSDD DCYKTMKVNV ESSKLIQCGF TLFNAKGEIG GVWEISFSNF
101: GDPSDTRNEN SIDFLKKHGV DLNKIRNEGV DMFKYNFFPK LLSALYSQKH VDHVEFVTFQ GAYDFAYVLS ILNYGKLPET RGEFASEVVR VFGEVYDLKV
201: MAGYCDGLGE HLGLSKLAQL LNIPRVGRAH HAGSDSLMTA LVFIKLRHVF EDSKFAKGML YGIGKRMMVT ATTTTATMTS SVSMPMMCQQ NLVSYPSSDM
301: IFHNGYMPSY DHNNQVLFWN HLAVPWMSYD NGMYVNQLNH VPSSTFAYPY QAPYAADYLG QLPDLLQ
101: GDPSDTRNEN SIDFLKKHGV DLNKIRNEGV DMFKYNFFPK LLSALYSQKH VDHVEFVTFQ GAYDFAYVLS ILNYGKLPET RGEFASEVVR VFGEVYDLKV
201: MAGYCDGLGE HLGLSKLAQL LNIPRVGRAH HAGSDSLMTA LVFIKLRHVF EDSKFAKGML YGIGKRMMVT ATTTTATMTS SVSMPMMCQQ NLVSYPSSDM
301: IFHNGYMPSY DHNNQVLFWN HLAVPWMSYD NGMYVNQLNH VPSSTFAYPY QAPYAADYLG QLPDLLQ
001: MNEIHQPLAR RVWRSNVDEE MARMAECLKR FPLIAFDTEY PGIIFRTYFD SSSDECYRAM KGNVENTKLI QCGFTLFNAK GEIGGVWEIN FSNFGDPSDT
101: RNELSIEFLR RHGLDLQKIR DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV KVFGQVYDTK VMAGFCEGLG
201: EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL
301: VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE
101: RNELSIEFLR RHGLDLQKIR DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV KVFGQVYDTK VMAGFCEGLG
201: EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL
301: VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE
Arabidopsis Description
CAF1-1Probable CCR4-associated factor 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.