Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026093.1-P | Field mustard | nucleus | 99.64 | 91.97 |
| AT1G15920.2 | Thale cress | nucleus | 62.68 | 60.49 |
| CDY63973 | Canola | nucleus | 59.78 | 60.22 |
| CDY53227 | Canola | nucleus | 59.42 | 59.85 |
| CDY64914 | Canola | nucleus | 59.42 | 59.42 |
| CDY39943 | Canola | cytosol | 59.06 | 59.27 |
| CDX87343 | Canola | cytosol | 59.06 | 59.27 |
| CDY12234 | Canola | nucleus | 59.06 | 59.06 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 51.45 | 57.96 |
| Solyc03g117030.1.1 | Tomato | nucleus | 57.25 | 57.66 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 57.25 | 57.66 |
| PGSC0003DMT400036620 | Potato | nucleus | 57.25 | 57.66 |
| KRH52356 | Soybean | nucleus | 56.16 | 56.78 |
| KRH61689 | Soybean | nucleus | 56.16 | 56.78 |
| KRH47360 | Soybean | nucleus | 56.88 | 56.68 |
| CDY33367 | Canola | cytosol, extracellular | 93.12 | 56.61 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 55.8 | 56.0 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 56.52 | 55.91 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 56.52 | 55.91 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 56.52 | 55.91 |
| KRH44539 | Soybean | cytosol | 56.88 | 55.87 |
| CDX70376 | Canola | nucleus | 55.8 | 55.8 |
| PGSC0003DMT400073328 | Potato | nucleus | 55.07 | 55.68 |
| PGSC0003DMT400058833 | Potato | cytosol | 54.71 | 55.11 |
| CDX78405 | Canola | nucleus | 55.43 | 55.04 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 53.62 | 54.81 |
| Solyc11g045130.1.1 | Tomato | cytosol | 54.35 | 54.74 |
| Os09t0416800-01 | Rice | cytosol | 55.07 | 54.29 |
| CDX97069 | Canola | nucleus | 55.07 | 54.29 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 53.62 | 54.21 |
| Zm00001d020486_P001 | Maize | extracellular | 54.35 | 53.76 |
| EER96736 | Sorghum | nucleus | 54.35 | 53.76 |
| CDX69796 | Canola | nucleus | 53.99 | 53.6 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 51.09 | 52.42 |
| EES05957 | Sorghum | nucleus | 54.35 | 52.08 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 50.72 | 52.04 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 47.46 | 51.98 |
| Solyc06g068410.2.1 | Tomato | nucleus | 47.46 | 51.98 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 23.91 | 51.97 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 50.36 | 51.67 |
| EES13910 | Sorghum | nucleus | 53.26 | 51.4 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 53.62 | 51.21 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 53.62 | 51.21 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 53.62 | 51.21 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 53.62 | 51.21 |
| Os02t0796300-01 | Rice | cytosol | 54.35 | 50.85 |
| CDY35673 | Canola | nucleus | 49.64 | 50.74 |
| CDY09125 | Canola | nucleus | 49.64 | 50.74 |
| Zm00001d052031_P001 | Maize | cytosol | 52.54 | 50.52 |
| CDY47299 | Canola | nucleus | 49.64 | 50.37 |
| CDY08688 | Canola | cytosol | 50.72 | 50.18 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 52.9 | 49.66 |
| Os08t0440300-03 | Rice | cytosol | 51.81 | 49.65 |
| Zm00001d050433_P001 | Maize | nucleus | 50.36 | 49.64 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 46.01 | 49.42 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 52.54 | 49.32 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 52.54 | 49.32 |
| CDX98586 | Canola | nucleus | 50.36 | 49.12 |
| CDX92371 | Canola | nucleus | 50.0 | 48.76 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 52.17 | 48.0 |
| CDX88806 | Canola | cytosol | 48.91 | 47.37 |
| KRH28796 | Soybean | nucleus | 16.3 | 45.92 |
| Zm00001d018378_P001 | Maize | nucleus | 11.96 | 41.77 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 38.41 | 37.99 |
| Zm00001d032158_P002 | Maize | plastid | 52.54 | 36.43 |
| CDY12236 | Canola | cytosol, extracellular | 50.36 | 33.74 |
| CDY26919 | Canola | cytosol | 31.52 | 27.02 |
| CDX73277 | Canola | cytosol | 31.52 | 26.93 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 30.43 | 22.89 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 30.07 | 22.62 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 30.8 | 22.55 |
| CDY12276 | Canola | cytosol | 24.64 | 19.21 |
| CDY22569 | Canola | cytosol | 30.07 | 18.36 |
| CDX96828 | Canola | cytosol | 0.36 | 0.83 |
| CDX83963 | Canola | cytosol | 0.36 | 0.83 |
| CDY70980 | Canola | cytosol | 0.36 | 0.83 |
Protein Annotations
| EnsemblPlants:CDY35049 | EnsemblPlantsGene:GSBRNA2T00057914001 | Gene3D:3.30.420.10 | GO:A0A078HC78 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF0 | PFAM:PF04857 | ProteinID:CDY35049 | ProteinID:CDY35049.1 | SUPFAM:SSF53098 | UniParc:UPI0004EE0A1C |
| UniProt:A0A078HC78 | MapMan:35.1 | : | : | : | : |
Description
BnaA06g10590DBnaA06g10590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC78]
Coordinates
chrLK032346:+:24923..26090
Molecular Weight (calculated)
31885.4 Da
IEP (calculated)
6.359
GRAVY (calculated)
-0.234
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMVTKQDDA IEIEIRNVWN ENLHHEMSLI SQAINYFPYV AMDTEFPGTV CKKVTTDTNP RRDDSTCYES LKTNVNMLNM IQLGLTLSDD QGNLPTFGTN
101: KRQCVWQFNF REFNLRTDMY APDSIELLRR SGIDFDRNSR VGIESKRFAD LLMGSGVVLN EEIQWVTFHC GYDFGYLLRL LTGRNLPEKQ LEFLYLVKMF
201: FPRVFDIKHM IGFCYDLFGG LSSVAERLEV ERVGISHQAG SDSLLTARVF RRMKETRFAG RSLDMYCGVL YGLGKC
101: KRQCVWQFNF REFNLRTDMY APDSIELLRR SGIDFDRNSR VGIESKRFAD LLMGSGVVLN EEIQWVTFHC GYDFGYLLRL LTGRNLPEKQ LEFLYLVKMF
201: FPRVFDIKHM IGFCYDLFGG LSSVAERLEV ERVGISHQAG SDSLLTARVF RRMKETRFAG RSLDMYCGVL YGLGKC
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
Arabidopsis Description
CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.