Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G225900.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 99.64 | 99.64 |
| EER96736 | Sorghum | nucleus | 89.96 | 89.96 |
| Os09t0416800-01 | Rice | cytosol | 89.96 | 89.64 |
| Zm00001d020486_P001 | Maize | extracellular | 88.89 | 88.89 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 64.87 | 73.88 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 72.76 | 73.82 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 76.34 | 72.45 |
| PGSC0003DMT400036620 | Potato | nucleus | 69.18 | 70.44 |
| Solyc03g117030.1.1 | Tomato | nucleus | 68.82 | 70.07 |
| KRH47360 | Soybean | nucleus | 69.18 | 69.68 |
| KRH61689 | Soybean | nucleus | 68.1 | 69.6 |
| CDY64914 | Canola | nucleus | 68.82 | 69.57 |
| Bra005614.1-P | Field mustard | nucleus | 68.82 | 69.57 |
| KRH52356 | Soybean | nucleus | 67.74 | 69.23 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 67.74 | 69.23 |
| CDY12234 | Canola | nucleus | 68.46 | 69.2 |
| AT2G32070.1 | Thale cress | nucleus | 68.1 | 69.09 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 67.74 | 68.98 |
| PGSC0003DMT400073328 | Potato | nucleus | 67.38 | 68.86 |
| CDX87343 | Canola | cytosol | 67.74 | 68.73 |
| Bra035152.1-P | Field mustard | cytosol | 67.74 | 68.73 |
| KRH44539 | Soybean | cytosol | 68.82 | 68.33 |
| CDY53227 | Canola | nucleus | 67.03 | 68.25 |
| Bra008439.1-P | Field mustard | nucleus | 67.03 | 68.25 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 70.61 | 68.17 |
| CDY39943 | Canola | cytosol | 67.03 | 68.0 |
| CDY63973 | Canola | nucleus | 66.67 | 67.88 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 65.59 | 67.78 |
| Solyc11g045130.1.1 | Tomato | cytosol | 66.31 | 67.52 |
| PGSC0003DMT400058833 | Potato | cytosol | 66.31 | 67.52 |
| AT5G10960.1 | Thale cress | nucleus | 64.16 | 64.62 |
| AT1G80780.3 | Thale cress | cytosol | 65.95 | 64.34 |
| Solyc06g068410.2.1 | Tomato | nucleus | 58.06 | 64.29 |
| CDX70376 | Canola | nucleus | 63.44 | 64.13 |
| CDX78405 | Canola | nucleus | 63.8 | 64.03 |
| Bra006083.1-P | Field mustard | nucleus | 63.8 | 64.03 |
| CDX97069 | Canola | nucleus | 63.8 | 63.57 |
| CDX69796 | Canola | nucleus | 63.08 | 63.31 |
| Bra009001.1-P | Field mustard | nucleus | 63.44 | 63.21 |
| KRH28796 | Soybean | nucleus | 21.15 | 60.2 |
| CDY35049 | Canola | nucleus | 55.91 | 56.52 |
| AT1G15920.2 | Thale cress | nucleus | 57.35 | 55.94 |
| Bra026093.1-P | Field mustard | nucleus | 56.27 | 52.51 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 45.16 | 38.53 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 34.05 | 36.82 |
| CDY12236 | Canola | cytosol, extracellular | 53.05 | 35.92 |
| CDY33367 | Canola | cytosol, extracellular | 56.99 | 35.02 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 31.9 | 33.84 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 19.35 | 31.03 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 29.75 | 29.33 |
| TraesCS6D01G318000.1 | Wheat | plastid | 28.67 | 28.27 |
| TraesCS4D01G069900.1 | Wheat | plastid | 29.75 | 27.48 |
| TraesCS3D01G126800.1 | Wheat | plastid | 30.82 | 12.65 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G233200.1 | EnsemblPlantsGene:TraesCS5D01G233200 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF0 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5D:-:340759271..340760110
Molecular Weight (calculated)
30808.6 Da
IEP (calculated)
4.726
GRAVY (calculated)
-0.025
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPTVEKPD GVEIREVWAE NLEAEFAVIR EIVDDYPYVA MDTEFPGVVC RPLGTFKSNA DFNYATLKAN VDMLKLIQLG LTFSDERGGL PALGPDGRPC
101: VWQFNFRGFD PRTDVAAADS IDLLRRSGID FARHAAEGAD SRRFAELLMS SGVVLNAEIH WVTFHSGYDF GYLLKLLTGS NLPDTSSGFF DLIRIYFPVI
201: YDIKHLMRFC NSLHGGLNKL AELLDVERVG ICHQAGSDSL LTALSFNKLK ESYFGGLTEK YAGVLYGLGT EGGETTSVH
101: VWQFNFRGFD PRTDVAAADS IDLLRRSGID FARHAAEGAD SRRFAELLMS SGVVLNAEIH WVTFHSGYDF GYLLKLLTGS NLPDTSSGFF DLIRIYFPVI
201: YDIKHLMRFC NSLHGGLNKL AELLDVERVG ICHQAGSDSL LTALSFNKLK ESYFGGLTEK YAGVLYGLGT EGGETTSVH
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Arabidopsis Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.