Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009001.1-P | Field mustard | nucleus | 93.86 | 92.86 |
| CDX70376 | Canola | nucleus | 92.42 | 92.75 |
| CDX69796 | Canola | nucleus | 92.78 | 92.45 |
| CDX97069 | Canola | nucleus | 92.78 | 91.79 |
| CDX78405 | Canola | nucleus | 92.06 | 91.73 |
| Bra006083.1-P | Field mustard | nucleus | 92.06 | 91.73 |
| KRH52356 | Soybean | nucleus | 74.73 | 75.82 |
| KRH61689 | Soybean | nucleus | 73.65 | 74.73 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 72.92 | 73.72 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 71.84 | 72.89 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 63.54 | 71.84 |
| PGSC0003DMT400073328 | Potato | nucleus | 70.76 | 71.79 |
| PGSC0003DMT400036620 | Potato | nucleus | 70.76 | 71.53 |
| Solyc03g117030.1.1 | Tomato | nucleus | 70.76 | 71.53 |
| PGSC0003DMT400058833 | Potato | cytosol | 70.04 | 70.8 |
| KRH47360 | Soybean | nucleus | 70.76 | 70.76 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 70.04 | 70.55 |
| KRH44539 | Soybean | cytosol | 70.76 | 69.75 |
| AT2G32070.1 | Thale cress | nucleus | 68.59 | 69.09 |
| Solyc11g045130.1.1 | Tomato | cytosol | 68.23 | 68.98 |
| Solyc06g068410.2.1 | Tomato | nucleus | 61.73 | 67.86 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 65.7 | 67.41 |
| AT1G80780.3 | Thale cress | cytosol | 68.59 | 66.43 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 64.62 | 64.16 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 64.62 | 64.16 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 64.62 | 64.16 |
| Os09t0416800-01 | Rice | cytosol | 63.9 | 63.21 |
| EER96736 | Sorghum | nucleus | 62.82 | 62.37 |
| KRH28796 | Soybean | nucleus | 21.66 | 61.22 |
| EES05957 | Sorghum | nucleus | 63.18 | 60.76 |
| Zm00001d020486_P001 | Maize | extracellular | 61.01 | 60.57 |
| Zm00001d052031_P001 | Maize | cytosol | 61.73 | 59.58 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 62.09 | 59.52 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 62.09 | 59.52 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 62.09 | 59.52 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 62.09 | 59.52 |
| Os02t0796300-01 | Rice | cytosol | 62.09 | 58.31 |
| AT1G15920.2 | Thale cress | nucleus | 59.57 | 57.69 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 55.96 | 57.62 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 51.62 | 56.75 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 54.87 | 56.51 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 54.87 | 56.51 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 51.26 | 55.25 |
| EES13910 | Sorghum | nucleus | 57.04 | 55.24 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 58.12 | 54.76 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 57.76 | 54.42 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 57.76 | 54.42 |
| Zm00001d050433_P001 | Maize | nucleus | 54.51 | 53.93 |
| Os08t0440300-03 | Rice | cytosol | 55.6 | 53.47 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 57.76 | 53.33 |
| AT3G44260.1 | Thale cress | cytosol | 51.99 | 51.43 |
| AT5G22250.1 | Thale cress | cytosol | 51.26 | 51.08 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 45.49 | 45.16 |
| Zm00001d018378_P001 | Maize | nucleus | 12.64 | 44.3 |
| Zm00001d032158_P002 | Maize | plastid | 57.04 | 39.7 |
| AT3G44240.1 | Thale cress | cytosol | 29.6 | 34.31 |
| AT1G61470.1 | Thale cress | nucleus | 31.05 | 30.94 |
| AT1G27890.1 | Thale cress | cytosol | 31.41 | 28.81 |
| AT1G27820.1 | Thale cress | cytosol | 31.05 | 27.74 |
| AT1G06450.1 | Thale cress | cytosol | 34.3 | 26.39 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:830963 | ProteinID:AED91615.1 | ArrayExpress:AT5G10960 | EnsemblPlantsGene:AT5G10960 |
| RefSeq:AT5G10960 | TAIR:AT5G10960 | RefSeq:AT5G10960-TAIR-G | EnsemblPlants:AT5G10960.1 | TAIR:AT5G10960.1 | EMBL:AY050855 |
| EMBL:AY142489 | ProteinID:CAB96851.1 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004527 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 |
| GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090503 | InterPro:IPR036397 | RefSeq:NP_196657.1 | PFAM:PF04857 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF31 | UniProt:Q9LEU4 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 |
| UniParc:UPI00000ABEF2 | : | : | : | : | : |
Description
CAF1-10Probable CCR4-associated factor 1 homolog 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU4]
Coordinates
chr5:+:3464098..3466314
Molecular Weight (calculated)
31535.1 Da
IEP (calculated)
4.667
GRAVY (calculated)
0.010
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETLKEDSI MIREVWDYNL VEEFALIREI VDKFSYIAMD TEFPGVVLKP VATFKYNNDL NYRTLKENVD LLKLIQVGLT FSDENGNLPT CGTDKFCIWQ
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.