Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005614.1-P | Field mustard | nucleus | 91.64 | 91.3 |
| CDY64914 | Canola | nucleus | 91.64 | 91.3 |
| CDY12234 | Canola | nucleus | 90.91 | 90.58 |
| AT1G80780.3 | Thale cress | cytosol | 85.82 | 82.52 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 81.09 | 81.39 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 72.0 | 80.82 |
| Solyc03g117030.1.1 | Tomato | nucleus | 79.27 | 79.56 |
| PGSC0003DMT400073328 | Potato | nucleus | 78.91 | 79.49 |
| PGSC0003DMT400036620 | Potato | nucleus | 78.91 | 79.2 |
| KRH47360 | Soybean | nucleus | 79.64 | 79.06 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 78.91 | 78.91 |
| KRH52356 | Soybean | nucleus | 76.73 | 77.29 |
| KRH44539 | Soybean | cytosol | 78.55 | 76.87 |
| KRH61689 | Soybean | nucleus | 76.0 | 76.56 |
| PGSC0003DMT400058833 | Potato | cytosol | 76.0 | 76.28 |
| Solyc06g068410.2.1 | Tomato | nucleus | 68.73 | 75.0 |
| Solyc11g045130.1.1 | Tomato | cytosol | 74.55 | 74.82 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 73.45 | 74.81 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 73.82 | 74.36 |
| AT5G10960.1 | Thale cress | nucleus | 69.09 | 68.59 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 69.09 | 68.1 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 69.09 | 68.1 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 69.09 | 68.1 |
| Os09t0416800-01 | Rice | cytosol | 68.36 | 67.14 |
| EER96736 | Sorghum | nucleus | 68.0 | 67.03 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 70.18 | 66.78 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 70.18 | 66.78 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 70.18 | 66.78 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 70.18 | 66.78 |
| EES05957 | Sorghum | nucleus | 69.82 | 66.67 |
| Zm00001d020486_P001 | Maize | extracellular | 66.55 | 65.59 |
| Zm00001d052031_P001 | Maize | cytosol | 67.64 | 64.81 |
| Os02t0796300-01 | Rice | cytosol | 69.45 | 64.75 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 61.82 | 63.2 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 61.82 | 63.2 |
| AT1G15920.2 | Thale cress | nucleus | 65.45 | 62.94 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 60.73 | 62.08 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 56.73 | 61.9 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 63.64 | 59.52 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 63.64 | 59.52 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 63.27 | 59.18 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 64.0 | 58.67 |
| KRH28796 | Soybean | nucleus | 20.73 | 58.16 |
| Os08t0440300-03 | Rice | cytosol | 60.0 | 57.29 |
| EES13910 | Sorghum | nucleus | 57.09 | 54.9 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 51.27 | 54.86 |
| Zm00001d050433_P001 | Maize | nucleus | 53.82 | 52.86 |
| Zm00001d018378_P001 | Maize | nucleus | 14.55 | 50.63 |
| AT3G44260.1 | Thale cress | cytosol | 51.27 | 50.36 |
| AT5G22250.1 | Thale cress | cytosol | 50.55 | 50.0 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 48.73 | 48.03 |
| CDY12236 | Canola | cytosol, extracellular | 64.0 | 42.72 |
| Zm00001d032158_P002 | Maize | plastid | 57.09 | 39.45 |
| AT3G44240.1 | Thale cress | cytosol | 28.73 | 33.05 |
| AT1G61470.1 | Thale cress | nucleus | 30.55 | 30.22 |
| AT1G27890.1 | Thale cress | cytosol | 29.82 | 27.15 |
| AT1G06450.1 | Thale cress | cytosol | 35.27 | 26.94 |
| AT1G27820.1 | Thale cress | cytosol | 30.18 | 26.77 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:817767 | ProteinID:AAD15397.2 | ProteinID:AEC08630.1 | ArrayExpress:AT2G32070 |
| EnsemblPlantsGene:AT2G32070 | RefSeq:AT2G32070 | TAIR:AT2G32070 | RefSeq:AT2G32070-TAIR-G | EnsemblPlants:AT2G32070.1 | TAIR:AT2G32070.1 |
| EMBL:AY050946 | EMBL:AY142584 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004527 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 |
| GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090503 | InterPro:IPR036397 | RefSeq:NP_565735.1 | PFAM:PF04857 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF34 | UniProt:Q9SKZ2 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI00000AC086 | : | : | : |
Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
Coordinates
chr2:-:13640594..13642060
Molecular Weight (calculated)
31544.7 Da
IEP (calculated)
4.592
GRAVY (calculated)
-0.103
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.