Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g045130.1.1 | Tomato | cytosol | 96.72 | 96.72 |
| KRH52356 | Soybean | nucleus | 84.31 | 84.62 |
| KRH61689 | Soybean | nucleus | 83.58 | 83.88 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 81.02 | 81.32 |
| PGSC0003DMT400036620 | Potato | nucleus | 80.29 | 80.29 |
| PGSC0003DMT400073328 | Potato | nucleus | 79.93 | 80.22 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 70.8 | 79.18 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 78.47 | 78.18 |
| AT2G32070.1 | Thale cress | nucleus | 76.28 | 76.0 |
| Bra005614.1-P | Field mustard | nucleus | 76.28 | 75.72 |
| CDY64914 | Canola | nucleus | 76.28 | 75.72 |
| Bra008439.1-P | Field mustard | nucleus | 74.82 | 74.82 |
| CDY53227 | Canola | nucleus | 74.82 | 74.82 |
| CDY12234 | Canola | nucleus | 75.18 | 74.64 |
| CDX87343 | Canola | cytosol | 74.82 | 74.55 |
| Bra035152.1-P | Field mustard | cytosol | 74.82 | 74.55 |
| CDY39943 | Canola | cytosol | 74.82 | 74.55 |
| CDY63973 | Canola | nucleus | 74.45 | 74.45 |
| KRH28796 | Soybean | nucleus | 25.55 | 71.43 |
| AT1G80780.3 | Thale cress | cytosol | 74.09 | 70.98 |
| AT5G10960.1 | Thale cress | nucleus | 70.8 | 70.04 |
| CDX70376 | Canola | nucleus | 69.34 | 68.84 |
| CDX69796 | Canola | nucleus | 69.71 | 68.7 |
| CDX78405 | Canola | nucleus | 69.71 | 68.7 |
| Bra006083.1-P | Field mustard | nucleus | 69.71 | 68.7 |
| Bra009001.1-P | Field mustard | nucleus | 69.71 | 68.21 |
| CDX97069 | Canola | nucleus | 69.34 | 67.86 |
| EES05957 | Sorghum | nucleus | 71.17 | 67.71 |
| Os09t0416800-01 | Rice | cytosol | 68.98 | 67.5 |
| EER96736 | Sorghum | nucleus | 68.61 | 67.38 |
| Zm00001d052031_P001 | Maize | cytosol | 70.07 | 66.9 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 70.07 | 66.44 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 70.07 | 66.44 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 70.07 | 66.44 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 70.07 | 66.44 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 67.52 | 66.31 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 67.52 | 66.31 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 67.52 | 66.31 |
| Zm00001d020486_P001 | Maize | extracellular | 67.15 | 65.95 |
| Os02t0796300-01 | Rice | cytosol | 70.07 | 65.08 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 58.03 | 63.1 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 61.31 | 62.45 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 61.31 | 62.45 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 60.95 | 62.08 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 65.69 | 61.22 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 65.33 | 60.88 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 64.96 | 60.54 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 65.33 | 59.67 |
| AT1G15920.2 | Thale cress | nucleus | 62.04 | 59.44 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 55.47 | 59.14 |
| PGSC0003DMT400015091 | Potato | nucleus | 55.84 | 57.3 |
| Os08t0440300-03 | Rice | cytosol | 58.76 | 55.9 |
| EES13910 | Sorghum | nucleus | 58.03 | 55.59 |
| CDY35049 | Canola | nucleus | 55.11 | 54.71 |
| Zm00001d018378_P001 | Maize | nucleus | 15.33 | 53.16 |
| PGSC0003DMT400050487 | Potato | nucleus | 54.74 | 52.63 |
| Zm00001d050433_P001 | Maize | nucleus | 53.28 | 52.14 |
| Bra026093.1-P | Field mustard | nucleus | 55.11 | 50.5 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 50.37 | 49.46 |
| PGSC0003DMT400086131 | Potato | nucleus | 48.91 | 48.91 |
| PGSC0003DMT400042215 | Potato | plastid | 50.37 | 48.42 |
| PGSC0003DMT400096830 | Potato | nucleus | 47.45 | 47.45 |
| PGSC0003DMT400089988 | Potato | nucleus | 45.62 | 45.79 |
| PGSC0003DMT400094861 | Potato | nucleus | 26.28 | 40.45 |
| Zm00001d032158_P002 | Maize | plastid | 57.3 | 39.45 |
| CDY12236 | Canola | cytosol, extracellular | 57.3 | 38.11 |
| CDY33367 | Canola | cytosol, extracellular | 56.57 | 34.14 |
Protein Annotations
| EntrezGene:102595031 | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | UniProt:M1C3D9 | PFAM:PF04857 | EnsemblPlantsGene:PGSC0003DMG400022860 | PGSC:PGSC0003DMG400022860 | EnsemblPlants:PGSC0003DMT400058833 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 |
| UniParc:UPI0002962C75 | RefSeq:XP_006356929.1 | : | : | : | : |
Description
Ccr4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022860]
Coordinates
chr11:+:31575400..31578882
Molecular Weight (calculated)
31295.3 Da
IEP (calculated)
4.395
GRAVY (calculated)
-0.130
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVLPKTDSI QIREVWSDNL EEEFALIRQI VDDYPYIAMD TEFPGVVLRP VGNFKHINEY NYQTLKDNVD MLNLIQLGLT FSDENGNLPT CGSEYYYIWQ
101: FNFREFDTSA DIFANDSIEL LIQSGIDFKK NNEMGIDAKQ FGELLMSSGI VLNDMVHWVT FHSGYDFGYL LKLLTCRTLP ETQAGFFDLL NMYFPLVYDI
201: KHLMKFCNSL HGGLNKLAEL LELERVGICH QAGSDSLLTS CAFKKLKDNF FNGSTEKYAG VLYGLGVEYG SDNK
101: FNFREFDTSA DIFANDSIEL LIQSGIDFKK NNEMGIDAKQ FGELLMSSGI VLNDMVHWVT FHSGYDFGYL LKLLTCRTLP ETQAGFFDLL NMYFPLVYDI
201: KHLMKFCNSL HGGLNKLAEL LELERVGICH QAGSDSLLTS CAFKKLKDNF FNGSTEKYAG VLYGLGVEYG SDNK
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Arabidopsis Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.