Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074030.1.1 | Tomato | nucleus | 94.38 | 95.45 |
| PGSC0003DMT400050487 | Potato | nucleus | 77.9 | 72.98 |
| PGSC0003DMT400058833 | Potato | cytosol | 57.3 | 55.84 |
| PGSC0003DMT400086131 | Potato | nucleus | 57.3 | 55.84 |
| PGSC0003DMT400073328 | Potato | nucleus | 56.55 | 55.31 |
| PGSC0003DMT400096830 | Potato | nucleus | 55.81 | 54.38 |
| PGSC0003DMT400042215 | Potato | plastid | 56.93 | 53.33 |
| PGSC0003DMT400036620 | Potato | nucleus | 54.31 | 52.92 |
| PGSC0003DMT400089988 | Potato | nucleus | 52.06 | 50.92 |
| PGSC0003DMT400094861 | Potato | nucleus | 29.59 | 44.38 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015091 | EnsemblPlantsGene:PGSC0003DMG400005899 | EntrezGene:102578270 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | PGSC:PGSC0003DMG400005899 | RefSeq:XP_006361099.1 | SUPFAM:SSF53098 | UniParc:UPI000294C0AB |
| UniProt:M1A5F6 | MapMan:16.8.2.1.2.2 | : | : | : | : |
Description
CCR4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005899]
Coordinates
chr6:-:54630496..54631625
Molecular Weight (calculated)
30484.3 Da
IEP (calculated)
4.900
GRAVY (calculated)
-0.176
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIKIREVWA HNLESEFELI STVIDNYPYI SMDTEFPGVV FKPKISYTRR QNSPSDQYKL LKSNVDVLNL IQLGLTLSDA DGNLPDLGSD GGYIWQFNFS
101: DFDVARDLYA PDSIELLRRQ GIDFEMNREC GIDSARFTEL MMSSGLVCNE SVSWVTFHSA YDFGYLVKIL TRRELPGGLE EFMEVVRVFF GNKVYDMKHL
201: MRFCNSLYGG LDRLAKTLSV DRAVGKCHQA GSDSLLTWHA FQKMRDIYFV NDGAERHAGV LYGLEVN
101: DFDVARDLYA PDSIELLRRQ GIDFEMNREC GIDSARFTEL MMSSGLVCNE SVSWVTFHSA YDFGYLVKIL TRRELPGGLE EFMEVVRVFF GNKVYDMKHL
201: MRFCNSLYGG LDRLAKTLSV DRAVGKCHQA GSDSLLTWHA FQKMRDIYFV NDGAERHAGV LYGLEVN
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.