Factsheet for PGSC0003DMT400036620

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117030.1.1	Tomato	nucleus	98.91	98.91
VIT_09s0070g00060.t01	Wine grape	nucleus	87.96	87.96
PGSC0003DMT400073328	Potato	nucleus	87.59	87.91
PGSC0003DMT400058833	Potato	cytosol	80.29	80.29
GSMUA_Achr9P13270_001	Banana	cytosol	79.93	79.64
GSMUA_Achr3P04600_001	Banana	nucleus	70.8	79.18
AT2G32070.1	Thale cress	nucleus	79.2	78.91
Bra005614.1-P	Field mustard	nucleus	79.2	78.62
CDY64914	Canola	nucleus	79.2	78.62
CDY12234	Canola	nucleus	79.2	78.62
Bra008439.1-P	Field mustard	nucleus	77.37	77.37
CDY53227	Canola	nucleus	77.37	77.37
CDY63973	Canola	nucleus	77.01	77.01
Bra035152.1-P	Field mustard	cytosol	77.01	76.73
CDX87343	Canola	cytosol	77.01	76.73
CDY39943	Canola	cytosol	76.64	76.36
AT1G80780.3	Thale cress	cytosol	76.64	73.43
AT5G10960.1	Thale cress	nucleus	71.53	70.76
CDX70376	Canola	nucleus	70.44	69.93
CDX69796	Canola	nucleus	70.8	69.78
CDX78405	Canola	nucleus	70.44	69.42
Bra006083.1-P	Field mustard	nucleus	70.44	69.42
TraesCS5B01G224400.1	Wheat	cytosol	70.44	69.18
TraesCS5D01G233200.1	Wheat	cytosol	70.44	69.18
TraesCS5A01G225900.1	Wheat	cytosol	70.44	69.18
Bra009001.1-P	Field mustard	nucleus	70.44	68.93
CDX97069	Canola	nucleus	70.07	68.57
Os09t0416800-01	Rice	cytosol	70.07	68.57
EER96736	Sorghum	nucleus	69.71	68.46
EES05957	Sorghum	nucleus	71.9	68.4
Zm00001d020486_P001	Maize	extracellular	68.61	67.38
TraesCS6A01G358700.1	Wheat	cytosol	70.44	66.78
TraesCS6B01G391400.1	Wheat	cytosol	70.44	66.78
HORVU6Hr1G085410.1	Barley	cytosol	70.44	66.78
TraesCS6D01G341500.1	Wheat	cytosol	70.44	66.78
Zm00001d052031_P001	Maize	cytosol	69.71	66.55
GSMUA_Achr4P04150_001	Banana	cytosol	65.33	66.54
GSMUA_Achr4P04220_001	Banana	nucleus	64.96	66.17
Os02t0796300-01	Rice	cytosol	70.8	65.76
GSMUA_Achr9P22440_001	Banana	cytosol	60.22	65.48
GSMUA_Achr4P11450_001	Banana	cytosol	63.5	64.68
AT1G15920.2	Thale cress	nucleus	63.87	61.19
TraesCS7B01G198900.1	Wheat	nucleus	64.6	60.2
TraesCS7A01G297000.1	Wheat	nucleus	64.23	59.86
TraesCS7D01G291400.1	Wheat	nucleus	64.23	59.86
HORVU7Hr1G067520.3	Barley	nucleus	64.23	58.67
CDY35049	Canola	nucleus	57.66	57.25
GSMUA_Achr2P05120_001	Banana	cytosol	53.65	57.2
EES13910	Sorghum	nucleus	59.12	56.64
Os08t0440300-03	Rice	cytosol	59.12	56.25
Zm00001d050433_P001	Maize	nucleus	55.84	54.64
PGSC0003DMT400015091	Potato	nucleus	52.92	54.31
Bra026093.1-P	Field mustard	nucleus	57.66	52.84
Zm00001d018378_P001	Maize	nucleus	14.96	51.9
PGSC0003DMT400050487	Potato	nucleus	51.82	49.82
GSMUA_Achr1P10040_001	Banana	nucleus	50.73	49.82
PGSC0003DMT400042215	Potato	plastid	49.27	47.37
PGSC0003DMT400096830	Potato	nucleus	46.72	46.72
PGSC0003DMT400086131	Potato	nucleus	46.72	46.72
PGSC0003DMT400089988	Potato	nucleus	43.8	43.96
Zm00001d032158_P002	Maize	plastid	58.39	40.2
PGSC0003DMT400094861	Potato	nucleus	25.55	39.33
CDY12236	Canola	cytosol, extracellular	58.39	38.84
CDY33367	Canola	cytosol, extracellular	59.49	35.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400036620	EnsemblPlantsGene:PGSC0003DMG400014121	EntrezGene:102598567	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PANTHER:PTHR10797:SF34	PFAM:PF04857	PGSC:PGSC0003DMG400014121	RefSeq:XP_006341359.1	SUPFAM:SSF53098	UniParc:UPI000294CA9E
UniProt:M1B3X6	MapMan:35.1	:	:	:	:

Description

Ccr4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014121]

Coordinates

chr3:+:56826874..56828354

Molecular Weight (calculated)

31201.2 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.116

Length

274 amino acids

Sequence
(BLAST)

001: MSILPKTDSI HIREVWFDNL EEEFALMREI VDDFPFVAMD TEFPGVVIRP VGNFKNSNDY HYQTLKDNVD MLKLIQLGLT FSDENGNLPK CGTDKYCIWQ
101: FNFREFNPNE DVFANDSIEL LRQSGIDFKM NHEKGVDAKH FAELLMSSGI VLNDSVSWVT FHSGYDFGYL LKLLTCQDLP ETQAGFFTLI NVYFPVIFDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTA CTFRKLKENF FSGSLDKYAG VLYGLGVENG QSTH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.