Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G297000.1 | Wheat | nucleus | 95.33 | 97.28 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 95.0 | 96.94 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 94.67 | 96.6 |
| Os08t0440300-03 | Rice | cytosol | 71.67 | 74.65 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 62.67 | 68.36 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 55.0 | 67.35 |
| KRH61689 | Soybean | nucleus | 59.67 | 65.57 |
| PGSC0003DMT400058833 | Potato | cytosol | 59.67 | 65.33 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 62.67 | 65.05 |
| EES13910 | Sorghum | nucleus | 62.0 | 65.03 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 59.33 | 64.96 |
| KRH52356 | Soybean | nucleus | 59.0 | 64.84 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 59.0 | 64.84 |
| Solyc11g045130.1.1 | Tomato | cytosol | 59.0 | 64.6 |
| PGSC0003DMT400036620 | Potato | nucleus | 58.67 | 64.23 |
| AT2G32070.1 | Thale cress | nucleus | 58.67 | 64.0 |
| KRH47360 | Soybean | nucleus | 59.0 | 63.9 |
| Solyc03g117030.1.1 | Tomato | nucleus | 58.33 | 63.87 |
| Bra008439.1-P | Field mustard | nucleus | 58.33 | 63.87 |
| CDY53227 | Canola | nucleus | 58.33 | 63.87 |
| Bra005614.1-P | Field mustard | nucleus | 58.67 | 63.77 |
| CDY64914 | Canola | nucleus | 58.67 | 63.77 |
| PGSC0003DMT400073328 | Potato | nucleus | 58.0 | 63.74 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 57.33 | 63.7 |
| CDY63973 | Canola | nucleus | 58.0 | 63.5 |
| CDX87343 | Canola | cytosol | 58.0 | 63.27 |
| Bra035152.1-P | Field mustard | cytosol | 58.0 | 63.27 |
| CDY12234 | Canola | nucleus | 58.0 | 63.04 |
| CDY39943 | Canola | cytosol | 57.67 | 62.91 |
| KRH44539 | Soybean | cytosol | 57.67 | 61.57 |
| Zm00001d050433_P001 | Maize | nucleus | 56.67 | 60.71 |
| Solyc06g068410.2.1 | Tomato | nucleus | 51.0 | 60.71 |
| AT1G80780.3 | Thale cress | cytosol | 56.67 | 59.44 |
| AT5G10960.1 | Thale cress | nucleus | 53.33 | 57.76 |
| CDX70376 | Canola | nucleus | 51.67 | 56.16 |
| CDX97069 | Canola | nucleus | 52.33 | 56.07 |
| CDX78405 | Canola | nucleus | 51.67 | 55.76 |
| CDX69796 | Canola | nucleus | 51.67 | 55.76 |
| Bra006083.1-P | Field mustard | nucleus | 51.67 | 55.76 |
| Bra009001.1-P | Field mustard | nucleus | 51.67 | 55.36 |
| AT1G15920.2 | Thale cress | nucleus | 52.67 | 55.24 |
| KRH28796 | Soybean | nucleus | 17.67 | 54.08 |
| CDY35049 | Canola | nucleus | 48.0 | 52.17 |
| Bra026093.1-P | Field mustard | nucleus | 48.33 | 48.49 |
| Zm00001d032158_P002 | Maize | plastid | 62.0 | 46.73 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 40.33 | 37.23 |
| CDY12236 | Canola | cytosol, extracellular | 45.67 | 33.25 |
| CDY33367 | Canola | cytosol, extracellular | 49.0 | 32.38 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G067520.3 | EnsemblPlantsGene:HORVU7Hr1G067520 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF0 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI00029644AA | UniProt:M0V0Q4 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr7H:+:352048399..352050036
Molecular Weight (calculated)
32970.1 Da
IEP (calculated)
4.339
GRAVY (calculated)
-0.118
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPAPMSAP PPPASSDDDA KPVDEEGVEI REVWATNLEA EFAVIRDVVD DYSYIAMDTE FPGIVCRPLG SFRSNDEYNY ATLKANVDML SLIQLGLTLS
101: DENGALPARG TGGRPCAWQF NFRGFDPRSD PANADSIDLL RNSGIDFDRF TTEGADTGHF AELLMSSGVL LNAEVQWVTF HSGYDFGYLL KLLTGRNLPD
201: TMPGFFDLIR IYFPVLYDIK HLMKYCGSLH GGLSKLGELL GVQRVGICHQ AGSDSLLTLQ CFKKLKEVYF RGSTENYAGV LYGLISDGGE NRPPAVLLIE
101: DENGALPARG TGGRPCAWQF NFRGFDPRSD PANADSIDLL RNSGIDFDRF TTEGADTGHF AELLMSSGVL LNAEVQWVTF HSGYDFGYLL KLLTGRNLPD
201: TMPGFFDLIR IYFPVLYDIK HLMKYCGSLH GGLSKLGELL GVQRVGICHQ AGSDSLLTLQ CFKKLKEVYF RGSTENYAGV LYGLISDGGE NRPPAVLLIE
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.