Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78405 | Canola | nucleus | 100.0 | 100.0 |
| CDX70376 | Canola | nucleus | 97.48 | 98.19 |
| AT5G10960.1 | Thale cress | nucleus | 91.73 | 92.06 |
| Bra009001.1-P | Field mustard | nucleus | 90.29 | 89.64 |
| KRH52356 | Soybean | nucleus | 73.74 | 75.09 |
| KRH61689 | Soybean | nucleus | 73.74 | 75.09 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 70.86 | 71.9 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 63.31 | 71.84 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 69.42 | 70.7 |
| PGSC0003DMT400073328 | Potato | nucleus | 69.42 | 70.7 |
| PGSC0003DMT400036620 | Potato | nucleus | 69.42 | 70.44 |
| Solyc03g117030.1.1 | Tomato | nucleus | 69.42 | 70.44 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 69.42 | 70.18 |
| KRH47360 | Soybean | nucleus | 69.78 | 70.04 |
| PGSC0003DMT400058833 | Potato | cytosol | 68.7 | 69.71 |
| KRH44539 | Soybean | cytosol | 69.78 | 69.04 |
| Solyc11g045130.1.1 | Tomato | cytosol | 67.63 | 68.61 |
| Bra008439.1-P | Field mustard | nucleus | 66.91 | 67.88 |
| Bra035152.1-P | Field mustard | cytosol | 66.91 | 67.64 |
| Solyc06g068410.2.1 | Tomato | nucleus | 61.15 | 67.46 |
| Bra005614.1-P | Field mustard | nucleus | 66.91 | 67.39 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 64.75 | 66.67 |
| KRH28796 | Soybean | nucleus | 22.66 | 64.29 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 64.03 | 63.8 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 64.03 | 63.8 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 64.03 | 63.8 |
| Os09t0416800-01 | Rice | cytosol | 64.03 | 63.57 |
| EER96736 | Sorghum | nucleus | 62.95 | 62.72 |
| EES05957 | Sorghum | nucleus | 64.75 | 62.5 |
| Zm00001d052031_P001 | Maize | cytosol | 63.31 | 61.32 |
| Zm00001d020486_P001 | Maize | extracellular | 60.79 | 60.57 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 62.95 | 60.55 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 62.95 | 60.55 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 62.95 | 60.55 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 62.95 | 60.55 |
| Os02t0796300-01 | Rice | cytosol | 63.31 | 59.66 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 57.19 | 59.11 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 53.24 | 58.73 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 56.12 | 57.99 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 56.12 | 57.99 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 51.44 | 55.64 |
| EES13910 | Sorghum | nucleus | 55.76 | 54.2 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 56.47 | 53.4 |
| Zm00001d050433_P001 | Maize | nucleus | 53.6 | 53.21 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 56.12 | 53.06 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 56.12 | 53.06 |
| Os08t0440300-03 | Rice | cytosol | 54.68 | 52.78 |
| Bra035002.1-P | Field mustard | nucleus | 50.72 | 52.03 |
| Bra020179.1-P | Field mustard | nucleus | 50.36 | 51.85 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 55.76 | 51.67 |
| Bra026093.1-P | Field mustard | nucleus | 55.04 | 51.17 |
| Bra002400.1-P | Field mustard | nucleus | 50.36 | 49.82 |
| Bra006616.1-P | Field mustard | cytosol | 50.72 | 49.47 |
| Zm00001d018378_P001 | Maize | nucleus | 13.31 | 46.84 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 45.32 | 45.16 |
| Zm00001d032158_P002 | Maize | plastid | 55.76 | 38.94 |
| Bra032421.1-P | Field mustard | cytosol, mitochondrion, nucleus | 30.58 | 23.16 |
| Bra023214.1-P | Field mustard | cytosol | 22.66 | 11.41 |
Protein Annotations
| EnsemblPlants:Bra006083.1 | EnsemblPlants:Bra006083.1-P | EnsemblPlantsGene:Bra006083 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF31 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI000253F8FD | UniProt:M4CPE5 | MapMan:35.1 |
Description
AT5G10960 (E=6e-150) | CCR4-NOT transcription complex protein, putative
Coordinates
chrA03:+:1911489..1912325
Molecular Weight (calculated)
31514.8 Da
IEP (calculated)
4.568
GRAVY (calculated)
-0.071
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETLKEDSI TIREVWNDNL LEEFALIREI VDKFTYVAMD TEFPGVVLKP VETFKHNNDL NYRTLKENVD LLKLIQVGLT FSDEDGNLPT CGADDKFCVW
101: QFNFREFNIG EDIYASESIE LLRQCGIDFK KNLERGIDVA RFGELMMSSG IVLNDSISWV TFHGGYDFGY LVKLLTCKEL PIKQADFFKL LYVYFPTVYD
201: IKHLMTFCNG LFGGLNRLAE LMGVERVGVC HQAGSDSLLT LGSFRKLKER YFPGSTERYS GVLYGLGVED GGGTNVAN
101: QFNFREFNIG EDIYASESIE LLRQCGIDFK KNLERGIDVA RFGELMMSSG IVLNDSISWV TFHGGYDFGY LVKLLTCKEL PIKQADFFKL LYVYFPTVYD
201: IKHLMTFCNG LFGGLNRLAE LMGVERVGVC HQAGSDSLLT LGSFRKLKER YFPGSTERYS GVLYGLGVED GGGTNVAN
001: MAETLKEDSI MIREVWDYNL VEEFALIREI VDKFSYIAMD TEFPGVVLKP VATFKYNNDL NYRTLKENVD LLKLIQVGLT FSDENGNLPT CGTDKFCIWQ
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
101: FNFREFNIGE DIYASESIEL LRQCGIDFKK NIEKGIDVVR FGELMMSSGI VLNDAISWVT FHGGYDFGYL VKLLTCKELP LKQADFFKLL YVYFPTVYDI
201: KHLMTFCNGL FGGLNRLAEL MGVERVGICH QAGSDSLLTL GSFRKLKERY FPGSTEKYTG VLYGLGVEDG TTTTVAN
Arabidopsis Description
CAF1-10Probable CCR4-associated factor 1 homolog 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.