Factsheet for Bra032421.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06214	Canola	cytosol, mitochondrion, nucleus	98.91	98.91
AT1G06450.1	Thale cress	cytosol	65.67	66.94
Bra035002.1-P	Field mustard	nucleus	25.34	34.32
Bra035152.1-P	Field mustard	cytosol	25.34	33.82
Bra020179.1-P	Field mustard	nucleus	24.8	33.7
Bra008439.1-P	Field mustard	nucleus	25.07	33.58
Bra005614.1-P	Field mustard	nucleus	25.07	33.33
Bra002400.1-P	Field mustard	nucleus	25.34	33.1
Bra006616.1-P	Field mustard	cytosol	25.07	32.28
Bra009001.1-P	Field mustard	nucleus	23.98	31.43
Bra006083.1-P	Field mustard	nucleus	23.16	30.58
GSMUA_Achr4P30930_001	Banana	cytosol	14.99	28.21
Bra026093.1-P	Field mustard	nucleus	22.62	27.76
GSMUA_Achr4P30910_001	Banana	nucleus	24.25	26.33
Bra023214.1-P	Field mustard	cytosol	22.89	15.22

Protein Annotations

EnsemblPlants:Bra032421.1	EnsemblPlants:Bra032421.1-P	EnsemblPlantsGene:Bra032421	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PANTHER:PTHR10797:SF16	PFAM:PF04857	SEG:seg	SUPFAM:SSF53098	UniParc:UPI00025434C1	UniProt:M4EUD9
MapMan:35.1	:	:	:	:	:

Description

AT1G06450 (E=2e-128) | CCR4-NOT transcription complex protein, putative

Coordinates

chrA09:-:36012023..36013126

Molecular Weight (calculated)

41775.0 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.227

Length

367 amino acids

Sequence
(BLAST)

001: MNVNHHHRLG PVPWTRTVWA ENVDQELACL KECLKLYPKI AFDTEYPGIM HRTYLHSSDD DCYKTMKVNV ESSKLIQCGF TLFNAKGEIG GVWEINFSNF
101: GDPSDTRNEN SIDFLKKHGV DLNKIRSEGV DMFKYNFFPK FLSALYSQKH VDHVEFVAFQ GAYDFAYVLS ILNYGKLPET RGEFASEVVR VFGEVYDLKV
201: MAGYCDGLGE HLGLSKLAQL LNIPRVGRAH HAGSDSLMTA LVFIKLRHVF EDSKFAKGML YGIGKRMMVT ATTTTTTMPS SVSMPMMCQQ NLVSYPSSDM
301: IFHNGYMPSY DHNNQVLFWN HLAVPWMSYD NGMYVDQLNH VPSSTFAYPY QTPYAADYLG QLPDLLQ

Best Arabidopsis Sequence Match ( AT1G06450.1 )
(BLAST)

001: MNEIHQPLAR RVWRSNVDEE MARMAECLKR FPLIAFDTEY PGIIFRTYFD SSSDECYRAM KGNVENTKLI QCGFTLFNAK GEIGGVWEIN FSNFGDPSDT
101: RNELSIEFLR RHGLDLQKIR DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV KVFGQVYDTK VMAGFCEGLG
201: EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL
301: VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE

Arabidopsis Description

CAF1-1Probable CCR4-associated factor 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.