Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88806 | Canola | cytosol | 99.3 | 99.3 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 42.81 | 96.06 |
| Bra020179.1-P | Field mustard | nucleus | 82.11 | 86.67 |
| Bra002400.1-P | Field mustard | nucleus | 85.26 | 86.48 |
| AT5G22250.1 | Thale cress | cytosol | 79.3 | 81.3 |
| Bra035002.1-P | Field mustard | nucleus | 74.74 | 78.6 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 69.82 | 71.58 |
| KRH30376 | Soybean | nucleus | 65.26 | 65.49 |
| KRH25294 | Soybean | nucleus | 63.86 | 65.47 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 65.26 | 60.19 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 65.26 | 59.62 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 43.86 | 58.69 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 34.74 | 57.23 |
| Solyc01g007840.2.1 | Tomato | plastid | 57.19 | 57.19 |
| PGSC0003DMT400042215 | Potato | plastid | 57.19 | 57.19 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 48.77 | 56.97 |
| Bra008439.1-P | Field mustard | nucleus | 49.12 | 51.09 |
| Bra006083.1-P | Field mustard | nucleus | 49.47 | 50.72 |
| Bra035152.1-P | Field mustard | cytosol | 48.77 | 50.55 |
| Bra005614.1-P | Field mustard | nucleus | 48.77 | 50.36 |
| Bra009001.1-P | Field mustard | nucleus | 49.12 | 50.0 |
| Zm00001d001774_P001 | Maize | nucleus | 47.37 | 45.45 |
| Bra026093.1-P | Field mustard | nucleus | 47.02 | 44.82 |
| Zm00001d026657_P001 | Maize | cytosol | 47.02 | 44.82 |
| Os04t0684900-02 | Rice | nucleus | 48.77 | 42.25 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 37.19 | 40.93 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 36.49 | 40.47 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 46.32 | 40.37 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 45.61 | 40.0 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 45.26 | 39.81 |
| EES11684 | Sorghum | nucleus | 46.67 | 39.7 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 45.26 | 39.69 |
| TraesCSU01G062600.1 | Wheat | cytosol | 33.68 | 37.35 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 33.68 | 37.21 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 16.14 | 35.38 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 16.14 | 35.38 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 16.14 | 35.38 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 16.84 | 35.04 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 33.33 | 34.55 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 21.05 | 34.48 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 23.16 | 32.04 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 34.74 | 31.33 |
| Os10t0124200-00 | Rice | cytosol | 31.93 | 30.85 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 28.07 | 30.42 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 28.07 | 30.19 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 27.72 | 30.04 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 27.72 | 29.92 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 30.18 | 29.86 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 29.12 | 29.33 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 30.18 | 29.25 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 30.18 | 29.25 |
| Os10t0128300-00 | Rice | plastid | 29.82 | 29.21 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 29.82 | 29.11 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 30.53 | 29.0 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 28.42 | 28.83 |
| EES10179 | Sorghum | plasma membrane, plastid | 28.42 | 28.83 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 37.89 | 28.8 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 29.47 | 28.77 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 29.12 | 28.33 |
| TraesCS6D01G318000.1 | Wheat | plastid | 28.07 | 28.27 |
| KXG20050 | Sorghum | plastid | 26.32 | 27.88 |
| TraesCS4D01G069900.1 | Wheat | plastid | 29.47 | 27.81 |
| Zm00001d002885_P001 | Maize | plastid | 30.88 | 27.59 |
| TraesCS4B01G071200.1 | Wheat | plastid | 29.12 | 27.57 |
| TraesCS4A01G243700.1 | Wheat | plastid | 28.77 | 27.52 |
| TraesCS4A01G243900.1 | Wheat | plastid | 28.77 | 27.24 |
| TraesCS4A01G243800.1 | Wheat | plastid | 28.42 | 27.18 |
| TraesCS4B01G071000.1 | Wheat | plastid | 28.07 | 27.12 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 28.42 | 27.09 |
| TraesCS4B01G071100.1 | Wheat | plastid | 28.42 | 26.82 |
| EES09326 | Sorghum | mitochondrion, nucleus | 27.37 | 26.17 |
| OQU83919 | Sorghum | mitochondrion | 21.75 | 25.41 |
| TraesCS3B01G445400.1 | Wheat | plastid | 29.12 | 25.08 |
| Bra032421.1-P | Field mustard | cytosol, mitochondrion, nucleus | 32.28 | 25.07 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 37.54 | 24.49 |
| KXG22837 | Sorghum | mitochondrion | 28.77 | 23.7 |
| Os07t0169800-00 | Rice | nucleus | 40.0 | 22.8 |
| OQU76452 | Sorghum | plastid | 12.98 | 22.7 |
| KXG38897 | Sorghum | plastid | 26.67 | 22.29 |
| Zm00001d029981_P001 | Maize | plastid | 28.42 | 21.83 |
| Zm00001d031508_P001 | Maize | cytosol | 29.12 | 21.07 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 13.68 | 20.74 |
| OQU76454 | Sorghum | plastid | 14.74 | 20.69 |
| Zm00001d007893_P001 | Maize | nucleus | 33.33 | 19.04 |
| EER98038 | Sorghum | plastid | 36.14 | 17.88 |
| OQU76453 | Sorghum | plastid | 14.39 | 13.62 |
| Bra023214.1-P | Field mustard | cytosol | 25.96 | 13.41 |
Protein Annotations
| EnsemblPlants:Bra006616.1 | EnsemblPlants:Bra006616.1-P | EnsemblPlantsGene:Bra006616 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI00025400D5 | UniProt:M4CQX5 |
| MapMan:16.8.2.1.2.2 | : | : | : | : | : |
Description
AT5G22250 (E=5e-122) | CCR4-NOT transcription complex protein, putative
Coordinates
chrA03:-:4289475..4290332
Molecular Weight (calculated)
32645.2 Da
IEP (calculated)
5.437
GRAVY (calculated)
-0.138
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMMLNPDVD LIDRGGSVVV REVWAYNLVS EFHLISAVVE DFPYISMDTE FPGVIFKAEP AILRRGNPGY LYKLLKSNVD VLSLIQVGIT LSDADGNLPD
101: LGGGVDGSRF IWEFNFRDFD VDRDAHAEDS IELLRRHGID FERNRSEGVE SERFAELMMS SGLICNESVS WGTFHSAYDF GYLVKILTRR ELPSSLRDFL
201: RLLRAFFGER VYDVKHMMKF CERRLYGGLD RLARSLEVNR KVGKCHQAGS DSLLTWHAFQ RMRDLYFVKE GPEKLAGVLY GLEVF
101: LGGGVDGSRF IWEFNFRDFD VDRDAHAEDS IELLRRHGID FERNRSEGVE SERFAELMMS SGLICNESVS WGTFHSAYDF GYLVKILTRR ELPSSLRDFL
201: RLLRAFFGER VYDVKHMMKF CERRLYGGLD RLARSLEVNR KVGKCHQAGS DSLLTWHAFQ RMRDLYFVKE GPEKLAGVLY GLEVF
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.