Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G347600.1 | Wheat | cytosol | 94.72 | 95.08 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 88.68 | 89.35 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 87.55 | 88.21 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 47.17 | 44.48 |
| TraesCS4A01G243800.1 | Wheat | plastid | 43.77 | 38.93 |
| TraesCS4A01G243700.1 | Wheat | plastid | 43.4 | 38.59 |
| TraesCS4A01G243900.1 | Wheat | plastid | 43.77 | 38.54 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 39.62 | 35.0 |
| Bra035002.1-P | Field mustard | nucleus | 33.58 | 32.84 |
| Bra020179.1-P | Field mustard | nucleus | 33.21 | 32.59 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 15.47 | 32.28 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 33.96 | 32.26 |
| CDY09125 | Canola | nucleus | 32.83 | 32.22 |
| CDY35673 | Canola | nucleus | 32.83 | 32.22 |
| CDY47299 | Canola | nucleus | 32.83 | 31.99 |
| AT3G44260.1 | Thale cress | cytosol | 33.21 | 31.43 |
| CDY08688 | Canola | cytosol | 32.83 | 31.18 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 31.32 | 29.86 |
| KRH30376 | Soybean | nucleus | 31.7 | 29.58 |
| AT5G22250.1 | Thale cress | cytosol | 30.94 | 29.5 |
| KRH25294 | Soybean | nucleus | 30.94 | 29.5 |
| PGSC0003DMT400042215 | Potato | plastid | 31.7 | 29.47 |
| CDX98586 | Canola | nucleus | 31.32 | 29.33 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 32.08 | 28.91 |
| CDX92371 | Canola | nucleus | 30.57 | 28.62 |
| Bra002400.1-P | Field mustard | nucleus | 30.19 | 28.47 |
| Solyc01g007840.2.1 | Tomato | plastid | 30.57 | 28.42 |
| CDX88806 | Canola | cytosol | 30.19 | 28.07 |
| Bra006616.1-P | Field mustard | cytosol | 30.19 | 28.07 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 30.57 | 28.03 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 30.94 | 26.54 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 24.53 | 25.1 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 29.43 | 25.0 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.77 | 24.51 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 29.43 | 24.07 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 29.06 | 17.62 |
| TraesCS3A01G447900.1 | Wheat | cytoskeleton, cytosol, nucleus | 19.62 | 8.18 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G347500.1 | EnsemblPlantsGene:TraesCS7A01G347500 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 |
| PFAM:PF04857 | SUPFAM:SSF53098 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7A:-:510398656..510400164
Molecular Weight (calculated)
28855.3 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.171
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDATDAAAV RSVWADNFEA ESAVFRQIAP HATHVALNVQ YPGCVVRGDA RKSHYDMTAE ERYQVIHANV SLLKPLQVGL AIRTGDGGRF AWEFNLRGFD
101: VASDLDARDP DSIAYLARRG VDLGRLPTSG VHGHELRWML RDSGLLGARA SWATFAGAYH VGYFAAMMSG EELPGDVNAF MEVVRQLLGP SVYDVKLLAR
201: QHDRRCVGAL SHVVKQLGVE QPDEPNSTPA GTGSTLALLA FETLKEKLGA NMEKHRGQLC GLQAV
101: VASDLDARDP DSIAYLARRG VDLGRLPTSG VHGHELRWML RDSGLLGARA SWATFAGAYH VGYFAAMMSG EELPGDVNAF MEVVRQLLGP SVYDVKLLAR
201: QHDRRCVGAL SHVVKQLGVE QPDEPNSTPA GTGSTLALLA FETLKEKLGA NMEKHRGQLC GLQAV
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.