Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | KRH52586 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | KRH61926 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30376 | Soybean | nucleus | 92.45 | 90.49 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 74.82 | 74.82 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 81.3 | 72.44 |
| Bra035002.1-P | Field mustard | nucleus | 69.78 | 71.59 |
| CDY47299 | Canola | nucleus | 69.42 | 70.96 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 78.78 | 70.87 |
| CDY08688 | Canola | cytosol | 70.86 | 70.61 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 32.01 | 70.08 |
| AT3G44260.1 | Thale cress | cytosol | 69.06 | 68.57 |
| KRH39619 | Soybean | cytosol, nucleus, plastid | 35.25 | 68.06 |
| AT5G22250.1 | Thale cress | cytosol | 67.99 | 67.99 |
| CDY35673 | Canola | nucleus | 65.83 | 67.78 |
| Bra020179.1-P | Field mustard | nucleus | 65.83 | 67.78 |
| CDY09125 | Canola | nucleus | 65.83 | 67.78 |
| CDX92371 | Canola | nucleus | 67.27 | 66.08 |
| CDX98586 | Canola | nucleus | 66.91 | 65.72 |
| Bra002400.1-P | Field mustard | nucleus | 66.19 | 65.48 |
| KRH67979 | Soybean | nucleus | 63.31 | 64.23 |
| KRG96235 | Soybean | nucleus | 63.31 | 64.23 |
| CDX88806 | Canola | cytosol | 65.47 | 63.86 |
| Bra006616.1-P | Field mustard | cytosol | 65.47 | 63.86 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 46.4 | 60.56 |
| PGSC0003DMT400042215 | Potato | plastid | 60.79 | 59.3 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 51.44 | 58.61 |
| Solyc01g007840.2.1 | Tomato | plastid | 60.07 | 58.6 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 35.97 | 57.8 |
| KRH61689 | Soybean | nucleus | 51.08 | 52.01 |
| KRH52356 | Soybean | nucleus | 51.08 | 52.01 |
| KRH47360 | Soybean | nucleus | 51.08 | 51.26 |
| KRH44539 | Soybean | cytosol | 50.36 | 49.82 |
| Zm00001d026657_P001 | Maize | cytosol | 50.36 | 46.82 |
| Zm00001d001774_P001 | Maize | nucleus | 50.0 | 46.8 |
| KRH28796 | Soybean | nucleus | 15.83 | 44.9 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 41.01 | 44.02 |
| Os04t0684900-02 | Rice | nucleus | 51.08 | 43.16 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 39.57 | 42.8 |
| EES11684 | Sorghum | nucleus | 50.36 | 41.79 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 48.56 | 41.54 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 48.2 | 41.36 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 48.56 | 41.28 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 47.84 | 40.92 |
| TraesCSU01G062600.1 | Wheat | cytosol | 35.97 | 38.91 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 35.61 | 38.37 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 16.91 | 36.15 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 16.91 | 36.15 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 16.91 | 36.15 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 17.63 | 35.77 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 34.17 | 34.55 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 38.49 | 33.86 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 20.5 | 32.76 |
| EES10179 | Sorghum | plasma membrane, plastid | 32.73 | 32.38 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 23.74 | 32.04 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 29.5 | 30.94 |
| Os10t0124200-00 | Rice | cytosol | 32.73 | 30.85 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 29.14 | 30.68 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 31.65 | 30.56 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 28.78 | 30.42 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 32.01 | 30.27 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 32.01 | 30.27 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 31.65 | 30.14 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 31.65 | 30.14 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 28.42 | 30.04 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 40.29 | 29.87 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 31.3 | 29.69 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 30.22 | 29.68 |
| Os10t0128300-00 | Rice | plastid | 30.94 | 29.55 |
| KXG20050 | Sorghum | plastid | 28.42 | 29.37 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 31.65 | 29.33 |
| TraesCS6D01G318000.1 | Wheat | plastid | 29.5 | 28.98 |
| Zm00001d002885_P001 | Maize | plastid | 33.09 | 28.84 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 27.7 | 27.4 |
| TraesCS4B01G071200.1 | Wheat | plastid | 29.5 | 27.24 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 29.14 | 27.09 |
| TraesCS4A01G243900.1 | Wheat | plastid | 29.14 | 26.91 |
| TraesCS4B01G071000.1 | Wheat | plastid | 28.42 | 26.78 |
| OQU83919 | Sorghum | mitochondrion | 23.38 | 26.64 |
| TraesCS4A01G243700.1 | Wheat | plastid | 28.42 | 26.51 |
| EES09326 | Sorghum | mitochondrion, nucleus | 28.42 | 26.51 |
| TraesCS4D01G069900.1 | Wheat | plastid | 28.78 | 26.49 |
| TraesCS4B01G071100.1 | Wheat | plastid | 28.78 | 26.49 |
| OQU76452 | Sorghum | plastid | 15.47 | 26.38 |
| TraesCS4A01G243800.1 | Wheat | plastid | 28.06 | 26.17 |
| TraesCS3B01G445400.1 | Wheat | plastid | 30.58 | 25.68 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 40.29 | 25.63 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 16.91 | 25.0 |
| Os07t0169800-00 | Rice | nucleus | 41.73 | 23.2 |
| KXG22837 | Sorghum | mitochondrion | 28.78 | 23.12 |
| OQU76454 | Sorghum | plastid | 16.55 | 22.66 |
| Zm00001d029981_P001 | Maize | plastid | 29.5 | 22.1 |
| KXG38897 | Sorghum | plastid | 26.98 | 21.99 |
| Zm00001d031508_P001 | Maize | cytosol | 30.58 | 21.57 |
| Zm00001d007893_P001 | Maize | nucleus | 35.97 | 20.04 |
| EER98038 | Sorghum | plastid | 39.93 | 19.27 |
| OQU76453 | Sorghum | plastid | 16.91 | 15.61 |
Protein Annotations
| EntrezGene:100811298 | MapMan:16.8.2.1.2.2 | Gene3D:3.30.420.10 | EMBL:ACUP02007229 | EnsemblPlantsGene:GLYMA_12G093100 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004535 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0090503 | UniProt:I1LRJ8 |
| InterPro:IPR036397 | EnsemblPlants:KRH25294 | ProteinID:KRH25294 | ProteinID:KRH25294.1 | PFAM:PF04857 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF35 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI000233C41E |
Description
hypothetical protein
Coordinates
chr12:+:7618168..7619955
Molecular Weight (calculated)
31784.8 Da
IEP (calculated)
6.039
GRAVY (calculated)
-0.216
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVFSEDPNP NPNPIVIREV WASNLESEFE LIRELIDRYP FISMDTEFPG VIFRPHVDPT KPFNHRNRPS DHYRLLKSNV DALNLIQVGL TLTDAAGNLP
101: DLAGNRSIWE FNFRDFDVAR DAYAPDSIDL LRRQGIDFAR NTADGVDSTC FAELMMSSGL VCNDAVSWVT FHSAYDFGYL VKILTRRNLP TRLEEFLKTV
201: KVFFGDNVYD VKHMMRFCDT LYGGLDRVAR TLNVDRAVGK CHQAGSDSLL TWHAFQKIVD IYFVKEEHRK HAGVLFGL
101: DLAGNRSIWE FNFRDFDVAR DAYAPDSIDL LRRQGIDFAR NTADGVDSTC FAELMMSSGL VCNDAVSWVT FHSAYDFGYL VKILTRRNLP TRLEEFLKTV
201: KVFFGDNVYD VKHMMRFCDT LYGGLDRVAR TLNVDRAVGK CHQAGSDSLL TWHAFQKIVD IYFVKEEHRK HAGVLFGL
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.