CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67979	Soybean	nucleus	95.62	95.62
KRH39619	Soybean	cytosol, nucleus, plastid	48.54	92.36
KRH30376	Soybean	nucleus	65.69	63.38
KRH25294	Soybean	nucleus	64.23	63.31
VIT_08s0007g02570.t01	Wine grape	nucleus	65.69	62.94
KRH26669	Soybean	endoplasmic reticulum, golgi	65.69	58.25
KRH22647	Soybean	endoplasmic reticulum, vacuole	62.04	54.49
KRH52356	Soybean	nucleus	53.28	53.48
KRH61689	Soybean	nucleus	52.92	53.11
KRH47360	Soybean	nucleus	52.55	51.99
KRH44539	Soybean	cytosol	52.19	50.89
KRH28796	Soybean	nucleus	15.69	43.88

Protein Annotations

EntrezGene:100805583	MapMan:16.8.2.1.2.2	Gene3D:3.30.420.10	EMBL:ACUP02012147	EnsemblPlantsGene:GLYMA_19G197600	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	UniProt:I1NAS4
InterPro:IPR036397	EnsemblPlants:KRG96235	ProteinID:KRG96235	ProteinID:KRG96235.1	PFAM:PF04857	PANTHER:PTHR10797
PANTHER:PTHR10797:SF10	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI000233DEC5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:45483541..45484848

Molecular Weight (calculated)

31089.1 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.022

Length

274 amino acids

Sequence
(BLAST)

001: MAQSHGSILT RSVWSSNLES EFDLIRSVID SFPLISMDTE FPGVVVRPDA CDPSFRHRQP AAHYAVLKAN VDRLHLIQIG LTLSDNAGNL PTLGTSNAFI
101: WEFNFRDFDV VRDAHAHDSV ELLRRQGIDF EKNRDFGIDS FRFAELMMSS GLVCDNAVSW VTFHSAYDFG YLVKLLTHRA LPEELREFLR LVRVFFGDRV
201: FDVKHLMRFC SNLHGGLNRV CQSLKVERVL GKSHQAGSDS LLTLHAFQNI REIYFGKADG LVQYAGVLYG LDVF

Best Arabidopsis Sequence Match ( AT1G80780.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.