CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96235	Soybean	nucleus	95.62	95.62
KRH39619	Soybean	cytosol, nucleus, plastid	47.81	90.97
KRH30376	Soybean	nucleus	66.06	63.73
KRH25294	Soybean	nucleus	64.23	63.31
VIT_08s0007g02570.t01	Wine grape	nucleus	66.06	63.29
KRH26669	Soybean	endoplasmic reticulum, golgi	65.69	58.25
KRH22647	Soybean	endoplasmic reticulum, vacuole	62.04	54.49
KRH52356	Soybean	nucleus	52.55	52.75
KRH61689	Soybean	nucleus	52.19	52.38
KRH47360	Soybean	nucleus	52.19	51.62
KRH44539	Soybean	cytosol	51.82	50.53
KRH28796	Soybean	nucleus	15.69	43.88

Protein Annotations

MapMan:16.8.2.1.2.2	Gene3D:3.30.420.10	EMBL:ACUP02002094	EnsemblPlantsGene:GLYMA_03G200000	GO:GO:0000932	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148
GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	UniProt:I1JQ66	InterPro:IPR036397
EnsemblPlants:KRH67979	ProteinID:KRH67979	ProteinID:KRH67979.1	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF10
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI000233979D	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:40887235..40888762

Molecular Weight (calculated)

31138.1 Da

IEP (calculated)

6.229

GRAVY (calculated)

-0.084

Length

274 amino acids

Sequence
(BLAST)

001: MAQSHGSILT RSVWSSNLES EFDLIRSVID SFPLISMDTE FPGVVVRPDA GDPSFRHRQP VAHYAVLKAN VDRLHLIQIG LTLSDNAGNL PTLGTSNAFI
101: WEFNFKDFDV ARDAHAHDSV ELLRRQGIDF EKNRDFGIDS FRFAELMMSS GLVCDDAVSW VTFHSAYDFG YLVKLMTHRT LPEELREFLR LVRVFFGDRV
201: FDVKHLMRFC SNLHGGLDRV CQSLKVERVI GKSHQAGSDS LLTLHAFQNI RENYFDKADG LVQYAGVLYG LEVF

Best Arabidopsis Sequence Match ( AT5G22250.1 )
(BLAST)

001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF

Arabidopsis Description

CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.