Factsheet for VIT_08s0007g02570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39619	Soybean	cytosol, nucleus, plastid	34.27	68.06
VIT_06s0080g01090.t01	Wine grape	nucleus	66.08	67.99
KRH67979	Soybean	nucleus	63.29	66.06
KRG96235	Soybean	nucleus	62.94	65.69
VIT_09s0070g00060.t01	Wine grape	nucleus	49.3	51.46
VIT_04s0008g05850.t01	Wine grape	nucleus	48.6	50.92
VIT_11s0037g00100.t01	Wine grape	nucleus	47.9	50.74

Protein Annotations

EntrezGene:100249306	wikigene:100249306	MapMan:16.8.2.1.2.2	Gene3D:3.30.420.10	EMBL:AM462742	ProteinID:CAN61475
ProteinID:CAN61475.1	ProteinID:CCB55477	ProteinID:CCB55477.1	UniProt:F6HKQ5	EMBL:FN595991	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397
EntrezGene:LOC100249306	wikigene:LOC100249306	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF3	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	TIGR:TC62054	UniParc:UPI0002108513	ArrayExpress:VIT_08s0007g02570
EnsemblPlantsGene:VIT_08s0007g02570	EnsemblPlants:VIT_08s0007g02570.t01	unigene:Vvi.958	RefSeq:XP_002281138	RefSeq:XP_002281138.1	RefSeq:XP_003632649
RefSeq:XP_003632649.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:16671056..16672943

Molecular Weight (calculated)

31882.1 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.010

Length

286 amino acids

Sequence
(BLAST)

001: MPTDDPPRTS APVEVRGVWS SNLDHEFKLI SSVIDLFPFV SMDTEFPGVI VRSLSGLPDP PQSPSAVNYV LLKANVDVLN LIQIGLTISD ADGNLPDFGT
101: GKRYIWEFNF RDFDVARDFH APDSIELLRQ QGIDFDKNRE LGIDSLRFAE LMMSSGLVCN ESVSWITFHS PYDFGYLVKI LTRRDLPSEL DEFLTLVGTF
201: FGANVYDVKH MIRFCASLYG GLDRVAKSLG VDRVIGKSHQ AGSDSLLTLH AFKRIMEVYL GKDGPEKYAG VLYGLEAIGE HPILNL

Best Arabidopsis Sequence Match ( AT3G44260.1 )
(BLAST)

001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF

Arabidopsis Description

CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.