Factsheet for VIT_09s0070g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073328	Potato	nucleus	88.69	89.01
Solyc03g117030.1.1	Tomato	nucleus	88.32	88.32
PGSC0003DMT400036620	Potato	nucleus	87.96	87.96
Solyc06g068410.2.1	Tomato	nucleus	77.37	84.13
GSMUA_Achr3P04600_001	Banana	nucleus	74.09	82.86
VIT_04s0008g05850.t01	Wine grape	nucleus	81.75	82.05
GSMUA_Achr9P13270_001	Banana	cytosol	82.12	81.82
AT2G32070.1	Thale cress	nucleus	81.39	81.09
Bra008439.1-P	Field mustard	nucleus	79.93	79.93
CDY53227	Canola	nucleus	79.93	79.93
CDY39943	Canola	cytosol	79.93	79.64
CDY63973	Canola	nucleus	79.56	79.56
CDY64914	Canola	nucleus	79.93	79.35
Bra005614.1-P	Field mustard	nucleus	79.93	79.35
Bra035152.1-P	Field mustard	cytosol	79.56	79.27
CDX87343	Canola	cytosol	79.56	79.27
CDY12234	Canola	nucleus	79.2	78.62
VIT_11s0037g00100.t01	Wine grape	nucleus	77.37	78.52
AT1G80780.3	Thale cress	cytosol	79.56	76.22
AT5G10960.1	Thale cress	nucleus	73.72	72.92
CDX69796	Canola	nucleus	72.99	71.94
CDX70376	Canola	nucleus	71.9	71.38
Bra009001.1-P	Field mustard	nucleus	72.63	71.07
CDX78405	Canola	nucleus	71.9	70.86
Bra006083.1-P	Field mustard	nucleus	71.9	70.86
CDX97069	Canola	nucleus	72.26	70.71
EES05957	Sorghum	nucleus	72.99	69.44
HORVU6Hr1G085410.1	Barley	cytosol	71.9	68.17
TraesCS6A01G358700.1	Wheat	cytosol	71.9	68.17
TraesCS6B01G391400.1	Wheat	cytosol	71.9	68.17
TraesCS6D01G341500.1	Wheat	cytosol	71.9	68.17
TraesCS5A01G225900.1	Wheat	cytosol	68.98	67.74
TraesCS5B01G224400.1	Wheat	cytosol	68.98	67.74
TraesCS5D01G233200.1	Wheat	cytosol	68.98	67.74
Zm00001d052031_P001	Maize	cytosol	70.8	67.6
Os09t0416800-01	Rice	cytosol	68.98	67.5
EER96736	Sorghum	nucleus	68.61	67.38
Os02t0796300-01	Rice	cytosol	71.9	66.78
Zm00001d020486_P001	Maize	extracellular	66.79	65.59
GSMUA_Achr9P22440_001	Banana	cytosol	58.76	63.89
GSMUA_Achr4P04150_001	Banana	cytosol	62.04	63.2
GSMUA_Achr4P04220_001	Banana	nucleus	61.68	62.83
GSMUA_Achr4P11450_001	Banana	cytosol	61.31	62.45
AT1G15920.2	Thale cress	nucleus	64.96	62.24
TraesCS7B01G198900.1	Wheat	nucleus	65.33	60.88
TraesCS7D01G291400.1	Wheat	nucleus	64.96	60.54
TraesCS7A01G297000.1	Wheat	nucleus	64.96	60.54
HORVU7Hr1G067520.3	Barley	nucleus	64.96	59.33
Os08t0440300-03	Rice	cytosol	60.58	57.64
CDY35049	Canola	nucleus	57.66	57.25
EES13910	Sorghum	nucleus	58.76	56.29
GSMUA_Achr2P05120_001	Banana	cytosol	51.82	55.25
Zm00001d018378_P001	Maize	nucleus	15.69	54.43
VIT_06s0080g01090.t01	Wine grape	nucleus	55.11	54.32
Zm00001d050433_P001	Maize	nucleus	55.11	53.93
Bra026093.1-P	Field mustard	nucleus	57.66	52.84
VIT_08s0007g02570.t01	Wine grape	nucleus	51.46	49.3
GSMUA_Achr1P10040_001	Banana	nucleus	49.63	48.75
Zm00001d032158_P002	Maize	plastid	57.66	39.7
CDY12236	Canola	cytosol, extracellular	56.93	37.86
CDY33367	Canola	cytosol, extracellular	59.85	36.12

Protein Annotations

EntrezGene:100250028	wikigene:100250028	Gene3D:3.30.420.10	MapMan:35.1	ProteinID:CCB61434	ProteinID:CCB61434.1
UniProt:F6I3B6	EMBL:FN596740	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015
GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397	EntrezGene:LOC100250028	wikigene:LOC100250028	PFAM:PF04857
PANTHER:PTHR10797	PANTHER:PTHR10797:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098
TIGR:TC52309	UniParc:UPI00015CB966	ArrayExpress:VIT_09s0070g00060	EnsemblPlantsGene:VIT_09s0070g00060	EnsemblPlants:VIT_09s0070g00060.t01	unigene:Vvi.4584
RefSeq:XP_002272165	RefSeq:XP_002272165.1	:	:	:	:

Description

No Description!

Coordinates

chr9:+:12984667..12985582

Molecular Weight (calculated)

31277.4 Da

IEP (calculated)

4.625

GRAVY (calculated)

-0.148

Length

274 amino acids

Sequence
(BLAST)

001: MSLLPKSDSI QIREVWNDNL EEEFALIRGI VDEFPFIAMD TEFPGIVLRP VGNFKNSNDY HYQTLKDNVD MLKLIQMGLT FSDEQGNLPT CGTDKYCIWQ
101: FNFREFNVNE DVFANDSIEL LRQSGIDFMK NNEKGIDAVR FGELLMSSGI VLNDNVYWVT FHSGYDFGYL LKLLTCKNLP DTQAGFFNLI NMYFPVLYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FSGSLEKYAG VLYGLGVENG QNTH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.