Factsheet for GSMUA_Achr3P04600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P13270_001	Banana	cytosol	93.88	83.64
VIT_09s0070g00060.t01	Wine grape	nucleus	82.86	74.09
KRH47360	Soybean	nucleus	82.04	72.56
KRH52356	Soybean	nucleus	80.41	72.16
AT2G32070.1	Thale cress	nucleus	80.82	72.0
KRH61689	Soybean	nucleus	80.0	71.79
Bra035152.1-P	Field mustard	cytosol	80.41	71.64
CDX87343	Canola	cytosol	80.41	71.64
VIT_04s0008g05850.t01	Wine grape	nucleus	79.59	71.43
CDY39943	Canola	cytosol	80.0	71.27
Solyc03g117030.1.1	Tomato	nucleus	79.59	71.17
KRH44539	Soybean	cytosol	81.22	70.82
PGSC0003DMT400036620	Potato	nucleus	79.18	70.8
CDY53227	Canola	nucleus	79.18	70.8
PGSC0003DMT400058833	Potato	cytosol	79.18	70.8
Bra008439.1-P	Field mustard	nucleus	79.18	70.8
CDY63973	Canola	nucleus	78.78	70.44
Solyc11g045130.1.1	Tomato	cytosol	77.96	69.71
Bra005614.1-P	Field mustard	nucleus	78.37	69.57
CDY64914	Canola	nucleus	78.37	69.57
CDY12234	Canola	nucleus	77.96	69.2
VIT_11s0037g00100.t01	Wine grape	nucleus	75.92	68.89
PGSC0003DMT400073328	Potato	nucleus	76.73	68.86
AT1G80780.3	Thale cress	cytosol	77.96	66.78
EER96736	Sorghum	nucleus	74.69	65.59
EES05957	Sorghum	nucleus	76.73	65.28
TraesCS5A01G225900.1	Wheat	cytosol	73.88	64.87
TraesCS5B01G224400.1	Wheat	cytosol	73.88	64.87
TraesCS5D01G233200.1	Wheat	cytosol	73.88	64.87
TraesCS6D01G341500.1	Wheat	cytosol	75.92	64.36
TraesCS6A01G358700.1	Wheat	cytosol	75.92	64.36
TraesCS6B01G391400.1	Wheat	cytosol	75.92	64.36
HORVU6Hr1G085410.1	Barley	cytosol	75.92	64.36
Solyc06g068410.2.1	Tomato	nucleus	66.12	64.29
Os09t0416800-01	Rice	cytosol	73.47	64.29
Zm00001d020486_P001	Maize	extracellular	72.65	63.8
CDX70376	Canola	nucleus	71.84	63.77
AT5G10960.1	Thale cress	nucleus	71.84	63.54
Zm00001d052031_P001	Maize	cytosol	74.29	63.41
CDX78405	Canola	nucleus	71.84	63.31
Bra006083.1-P	Field mustard	nucleus	71.84	63.31
Os02t0796300-01	Rice	cytosol	75.92	63.05
CDX69796	Canola	nucleus	70.61	62.23
CDX97069	Canola	nucleus	70.61	61.79
Bra009001.1-P	Field mustard	nucleus	70.2	61.43
GSMUA_Achr9P22440_001	Banana	cytosol	62.04	60.32
GSMUA_Achr4P04150_001	Banana	cytosol	65.31	59.48
GSMUA_Achr4P04220_001	Banana	nucleus	64.9	59.11
GSMUA_Achr4P11450_001	Banana	cytosol	64.08	58.36
TraesCS7B01G198900.1	Wheat	nucleus	68.16	56.8
TraesCS7A01G297000.1	Wheat	nucleus	67.76	56.46
TraesCS7D01G291400.1	Wheat	nucleus	67.76	56.46
HORVU7Hr1G067520.3	Barley	nucleus	67.35	55.0
AT1G15920.2	Thale cress	nucleus	62.45	53.5
EES13910	Sorghum	nucleus	62.04	53.15
Os08t0440300-03	Rice	cytosol	62.04	52.78
CDY35049	Canola	nucleus	57.96	51.45
GSMUA_Achr2P05120_001	Banana	cytosol	53.88	51.36
GSMUA_Achr9P29700_001	Banana	cytosol	44.49	51.17
Zm00001d050433_P001	Maize	nucleus	56.73	49.64
Zm00001d018378_P001	Maize	nucleus	15.92	49.37
GSMUA_Achr6P19450_001	Banana	cytosol	48.57	48.77
Bra026093.1-P	Field mustard	nucleus	57.96	47.49
GSMUA_Achr1P10040_001	Banana	nucleus	51.02	44.8
KRH28796	Soybean	nucleus	16.73	41.84
GSMUA_Achr6P19460_001	Banana	cytosol	29.39	41.62
GSMUA_AchrUn_...	Banana	mitochondrion	39.59	37.74
Zm00001d032158_P002	Maize	plastid	61.22	37.69
GSMUA_Achr8P18010_001	Banana	mitochondrion	39.59	37.45
CDY12236	Canola	cytosol, extracellular	61.22	36.41
CDY33367	Canola	cytosol, extracellular	60.41	32.6
GSMUA_Achr4P30930_001	Banana	cytosol	22.45	28.21
GSMUA_Achr4P30910_001	Banana	nucleus	33.47	24.26

Protein Annotations

EnsemblPlants:GSMUA_Achr3P04600_001	EnsemblPlants:GSMUA_Achr3T04600_001	EnsemblPlantsGene:GSMUA_Achr3G04600_001	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PANTHER:PTHR10797:SF34	PFAM:PF04857	SUPFAM:SSF53098	UniParc:UPI000296DC45	UniProt:M0SBS8	MapMan:35.1

Description

Probable CCR4-associated factor 1 homolog 7 [Source:GMGC_GENE;Acc:GSMUA_Achr3G04600_001]

Coordinates

chr3:-:2969856..2970683

Molecular Weight (calculated)

27496.6 Da

IEP (calculated)

4.528

GRAVY (calculated)

-0.073

Length

245 amino acids

Sequence
(BLAST)

001: MSSILPKNET VQIREVWSDN LAAEFALIRE IVDDFPYVAM DTEFPGILGL TFSDQLGNLP TCGTDRGCVW QFNFREFDIQ QDVFASDSID LLRQSGIDFQ
101: KNNEKGIDSQ RFGELLMSSG IVLNDSVHWV TFHSGYDFGY LLKLLTCQNL PDTQAGFFNL INIYFPTVYD IKHIMKFCNS LHGGLNKLAE LLDVERVGIC
201: HQAGSDSLLT SCAFRKLKES FFNGSTEKYA GVLYGLGVEN GQTAH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.