Factsheet for VIT_11s0037g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0070g00060.t01	Wine grape	nucleus	78.52	77.37
GSMUA_Achr3P04600_001	Banana	nucleus	68.89	75.92
GSMUA_Achr9P13270_001	Banana	cytosol	76.67	75.27
AT2G32070.1	Thale cress	nucleus	74.81	73.45
Bra005614.1-P	Field mustard	nucleus	74.81	73.19
CDY64914	Canola	nucleus	74.81	73.19
VIT_04s0008g05850.t01	Wine grape	nucleus	73.7	72.89
CDY12234	Canola	nucleus	74.44	72.83
Bra035152.1-P	Field mustard	cytosol	71.85	70.55
CDX87343	Canola	cytosol	71.85	70.55
Bra008439.1-P	Field mustard	nucleus	71.48	70.44
CDY53227	Canola	nucleus	71.48	70.44
CDY63973	Canola	nucleus	71.11	70.07
CDY39943	Canola	cytosol	71.11	69.82
AT1G80780.3	Thale cress	cytosol	71.85	67.83
EER96736	Sorghum	nucleus	68.15	65.95
Os09t0416800-01	Rice	cytosol	68.15	65.71
AT5G10960.1	Thale cress	nucleus	67.41	65.7
TraesCS5D01G233200.1	Wheat	cytosol	67.78	65.59
TraesCS5B01G224400.1	Wheat	cytosol	67.78	65.59
TraesCS5A01G225900.1	Wheat	cytosol	67.78	65.59
CDX70376	Canola	nucleus	66.67	65.22
CDX78405	Canola	nucleus	66.67	64.75
CDX69796	Canola	nucleus	66.67	64.75
Bra006083.1-P	Field mustard	nucleus	66.67	64.75
Zm00001d020486_P001	Maize	extracellular	66.67	64.52
CDX97069	Canola	nucleus	66.67	64.29
Bra009001.1-P	Field mustard	nucleus	66.3	63.93
EES05957	Sorghum	nucleus	68.15	63.89
TraesCS6B01G391400.1	Wheat	cytosol	67.78	63.32
HORVU6Hr1G085410.1	Barley	cytosol	67.78	63.32
TraesCS6A01G358700.1	Wheat	cytosol	67.78	63.32
TraesCS6D01G341500.1	Wheat	cytosol	67.78	63.32
Zm00001d052031_P001	Maize	cytosol	67.04	63.07
Os02t0796300-01	Rice	cytosol	67.78	62.03
GSMUA_Achr4P04150_001	Banana	cytosol	61.48	61.71
GSMUA_Achr4P04220_001	Banana	nucleus	61.11	61.34
GSMUA_Achr4P11450_001	Banana	cytosol	60.74	60.97
GSMUA_Achr9P22440_001	Banana	cytosol	55.93	59.92
TraesCS7B01G198900.1	Wheat	nucleus	63.7	58.5
TraesCS7D01G291400.1	Wheat	nucleus	63.7	58.5
TraesCS7A01G297000.1	Wheat	nucleus	63.7	58.5
AT1G15920.2	Thale cress	nucleus	61.48	58.04
HORVU7Hr1G067520.3	Barley	nucleus	63.7	57.33
GSMUA_Achr2P05120_001	Banana	cytosol	53.33	56.03
Os08t0440300-03	Rice	cytosol	59.26	55.56
CDY35049	Canola	nucleus	54.81	53.62
EES13910	Sorghum	nucleus	56.3	53.15
VIT_06s0080g01090.t01	Wine grape	nucleus	54.44	52.88
Zm00001d050433_P001	Maize	nucleus	52.96	51.07
Bra026093.1-P	Field mustard	nucleus	54.81	49.5
VIT_08s0007g02570.t01	Wine grape	nucleus	50.74	47.9
GSMUA_Achr1P10040_001	Banana	nucleus	49.26	47.67
Zm00001d018378_P001	Maize	nucleus	11.85	40.51
Zm00001d032158_P002	Maize	plastid	55.19	37.44
CDY12236	Canola	cytosol, extracellular	57.04	37.38
CDY33367	Canola	cytosol, extracellular	56.3	33.48

Protein Annotations

EntrezGene:100248407	wikigene:100248407	Gene3D:3.30.420.10	MapMan:35.1	EMBL:AM462597	ProteinID:CAN68032
ProteinID:CAN68032.1	ProteinID:CCB59752	ProteinID:CCB59752.1	UniProt:F6HYI8	EMBL:FN596499	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397
EntrezGene:LOC100248407	wikigene:LOC100248407	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF34	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	TIGR:TC56246	UniParc:UPI00015C9C14	ArrayExpress:VIT_11s0037g00100
EnsemblPlantsGene:VIT_11s0037g00100	EnsemblPlants:VIT_11s0037g00100.t01	unigene:Vvi.8673	RefSeq:XP_002279241	RefSeq:XP_002279241.1	:

Description

No Description!

Coordinates

chr11:-:7760364..7761228

Molecular Weight (calculated)

30892.8 Da

IEP (calculated)

4.904

GRAVY (calculated)

-0.175

Length

270 amino acids

Sequence
(BLAST)

001: MSDVLVNDTF HIRDVWDDNL EDEIRLIRGL LDDYPYIAMD TEFPGVVLRS VGNFKNNNEY NFQTLKTNVD LLKLIQLGLT FSDEHGNFPT CGTERYCVWQ
101: FNFREFNLNE DVFAHDSIEL LKQSGIDFKK NNEKGVDARR FSELLMSSGI VLNESVHWVT FHSGYDFGYL LKLLTSQNLP ETQAGFFELI RIYFPILYDI
201: KHLMKFCNSL HGGLNKLAEL LGVERIGSCH QAGSDSLLTC CTFMKLKKDF FNGSPEKYAG VLYGLGVESG

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.