Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53227 | Canola | nucleus | 99.27 | 99.27 |
| CDX87343 | Canola | cytosol | 95.26 | 94.91 |
| CDY39943 | Canola | cytosol | 94.53 | 94.18 |
| AT1G80780.3 | Thale cress | cytosol | 91.97 | 88.11 |
| CDY64914 | Canola | nucleus | 82.48 | 81.88 |
| CDY12234 | Canola | nucleus | 82.12 | 81.52 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 79.56 | 79.56 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 70.44 | 78.78 |
| KRH47360 | Soybean | nucleus | 78.83 | 77.98 |
| Solyc03g117030.1.1 | Tomato | nucleus | 77.01 | 77.01 |
| PGSC0003DMT400036620 | Potato | nucleus | 77.01 | 77.01 |
| PGSC0003DMT400073328 | Potato | nucleus | 75.91 | 76.19 |
| KRH44539 | Soybean | cytosol | 77.74 | 75.8 |
| KRH61689 | Soybean | nucleus | 75.18 | 75.46 |
| KRH52356 | Soybean | nucleus | 75.18 | 75.46 |
| PGSC0003DMT400058833 | Potato | cytosol | 74.45 | 74.45 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 73.72 | 73.45 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 72.63 | 72.89 |
| Solyc11g045130.1.1 | Tomato | cytosol | 72.63 | 72.63 |
| Solyc06g068410.2.1 | Tomato | nucleus | 66.79 | 72.62 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 70.07 | 71.11 |
| CDX70376 | Canola | nucleus | 67.52 | 67.03 |
| Os09t0416800-01 | Rice | cytosol | 68.25 | 66.79 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 67.88 | 66.67 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 67.88 | 66.67 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 67.88 | 66.67 |
| CDX78405 | Canola | nucleus | 67.15 | 66.19 |
| EES05957 | Sorghum | nucleus | 68.98 | 65.62 |
| CDX69796 | Canola | nucleus | 66.42 | 65.47 |
| CDX97069 | Canola | nucleus | 66.42 | 65.0 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 68.25 | 64.71 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 68.25 | 64.71 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 68.25 | 64.71 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 68.25 | 64.71 |
| EER96736 | Sorghum | nucleus | 65.69 | 64.52 |
| Zm00001d020486_P001 | Maize | extracellular | 65.33 | 64.16 |
| Os02t0796300-01 | Rice | cytosol | 68.98 | 64.07 |
| Zm00001d052031_P001 | Maize | cytosol | 66.79 | 63.76 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 60.58 | 61.71 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 60.22 | 61.34 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 60.22 | 61.34 |
| KRH28796 | Soybean | nucleus | 21.53 | 60.2 |
| CDY35049 | Canola | nucleus | 60.22 | 59.78 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 54.74 | 59.52 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 63.87 | 59.52 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 63.87 | 59.52 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 63.5 | 59.18 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 63.5 | 58.0 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 26.28 | 56.69 |
| EES13910 | Sorghum | nucleus | 58.39 | 55.94 |
| Os08t0440300-03 | Rice | cytosol | 57.3 | 54.51 |
| Zm00001d050433_P001 | Maize | nucleus | 54.74 | 53.57 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 49.63 | 52.92 |
| CDY35673 | Canola | nucleus | 50.0 | 50.74 |
| CDY09125 | Canola | nucleus | 49.63 | 50.37 |
| CDY47299 | Canola | nucleus | 49.27 | 49.63 |
| CDX88806 | Canola | cytosol | 51.46 | 49.47 |
| CDX98586 | Canola | nucleus | 51.09 | 49.47 |
| CDX92371 | Canola | nucleus | 50.73 | 49.12 |
| CDY08688 | Canola | cytosol | 50.0 | 49.1 |
| Zm00001d018378_P001 | Maize | nucleus | 13.5 | 46.84 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 46.35 | 45.52 |
| CDY12236 | Canola | cytosol, extracellular | 62.04 | 41.26 |
| Zm00001d032158_P002 | Maize | plastid | 58.76 | 40.45 |
| CDY33367 | Canola | cytosol, extracellular | 61.68 | 37.22 |
| CDY26919 | Canola | cytosol | 30.29 | 25.78 |
| CDX73277 | Canola | cytosol | 30.29 | 25.7 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 33.94 | 25.34 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 33.58 | 25.07 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 34.31 | 24.93 |
| CDY12276 | Canola | cytosol | 24.09 | 18.64 |
| CDY22569 | Canola | cytosol | 30.29 | 18.36 |
| CDX83963 | Canola | cytosol | 1.09 | 2.5 |
| CDY70980 | Canola | cytosol | 1.09 | 2.5 |
| CDX96828 | Canola | cytosol | 1.09 | 2.5 |
Protein Annotations
| EnsemblPlants:CDY63973 | EnsemblPlantsGene:GSBRNA2T00040761001 | Gene3D:3.30.420.10 | GO:A0A078JFV7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF34 | PFAM:PF04857 | ProteinID:CDY63973 | ProteinID:CDY63973.1 | SUPFAM:SSF53098 | UniParc:UPI0004EED224 |
| UniProt:A0A078JFV7 | MapMan:35.1 | : | : | : | : |
Description
BnaC02g46620DBnaC02g46620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFV7]
Coordinates
chrLK034379:-:23212..24569
Molecular Weight (calculated)
31146.2 Da
IEP (calculated)
4.475
GRAVY (calculated)
-0.019
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLFLKDDSI QIREVWNDNL HEEMDLIRQV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKLNVN ILSIIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFAVDSIDL LKQSGIDFAK NTQEGIESNR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQDLP DSQTGFFQLI NVYFPMVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FAGPLQKYAG VLYGLGVENA QVAL
101: FNFREFDLDS DIFAVDSIDL LKQSGIDFAK NTQEGIESNR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQDLP DSQTGFFQLI NVYFPMVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FAGPLQKYAG VLYGLGVENA QVAL
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.