Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22569 | Canola | cytosol | 72.03 | 56.42 |
| Bra023214.1-P | Field mustard | cytosol | 73.45 | 47.1 |
| CDY26919 | Canola | cytosol | 40.96 | 45.03 |
| CDX73277 | Canola | cytosol | 40.68 | 44.58 |
| AT1G27890.1 | Thale cress | cytosol | 35.59 | 41.72 |
| AT1G27820.1 | Thale cress | cytosol | 35.03 | 40.0 |
| AT1G61470.1 | Thale cress | nucleus | 30.23 | 38.49 |
| CDY09125 | Canola | nucleus | 20.9 | 27.41 |
| CDY35673 | Canola | nucleus | 20.9 | 27.41 |
| CDY47299 | Canola | nucleus | 20.34 | 26.47 |
| CDX88806 | Canola | cytosol | 20.9 | 25.96 |
| CDX69796 | Canola | nucleus | 20.34 | 25.9 |
| CDY08688 | Canola | cytosol | 20.34 | 25.81 |
| CDY64914 | Canola | nucleus | 20.06 | 25.72 |
| CDX97069 | Canola | nucleus | 20.34 | 25.71 |
| CDY12234 | Canola | nucleus | 19.77 | 25.36 |
| CDX98586 | Canola | nucleus | 19.77 | 24.73 |
| CDY35049 | Canola | nucleus | 19.21 | 24.64 |
| CDX70376 | Canola | nucleus | 19.21 | 24.64 |
| CDX92371 | Canola | nucleus | 19.49 | 24.38 |
| CDX78405 | Canola | nucleus | 18.93 | 24.1 |
| CDY63973 | Canola | nucleus | 18.64 | 24.09 |
| CDY53227 | Canola | nucleus | 18.64 | 24.09 |
| CDX87343 | Canola | cytosol | 18.64 | 24.0 |
| CDY39943 | Canola | cytosol | 18.64 | 24.0 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 24.86 | 23.98 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 24.86 | 23.98 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 25.14 | 23.61 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 12.43 | 22.56 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 7.91 | 22.05 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 19.77 | 20.71 |
| CDY12236 | Canola | cytosol, extracellular | 19.21 | 16.5 |
| CDY33367 | Canola | cytosol, extracellular | 20.34 | 15.86 |
| CDX96828 | Canola | cytosol | 0.28 | 0.83 |
| CDY70980 | Canola | cytosol | 0.28 | 0.83 |
| CDX83963 | Canola | cytosol | 0.28 | 0.83 |
Protein Annotations
| EnsemblPlants:CDY12276 | EnsemblPlantsGene:GSBRNA2T00061340001 | Gene3D:3.30.420.10 | GO:A0A078FGA6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | ncoils:Coil |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF16 | PFAM:PF04857 | ProteinID:CDY12276 | ProteinID:CDY12276.1 | SEG:seg |
| SUPFAM:SSF53098 | UniParc:UPI0004EE2FCD | UniProt:A0A078FGA6 | MapMan:35.1 | : | : |
Description
BnaA09g24760DBnaA09g24760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGA6]
Coordinates
chrLK032019:+:362477..364099
Molecular Weight (calculated)
41375.7 Da
IEP (calculated)
6.264
GRAVY (calculated)
-0.505
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MREIFGSKNE EEMELIKKVL KTCEFIAVDT EFPGCLKETP IGATDETRYK NLKFNVERTK PIQLGFTLFE RDGSIGGTWE VNFKDFDART DACNEKSIEF
101: LRRNGLNFKK IRQEGTLEAF NKTVEETLGL TFDVKKIVVD CKGVSARYGL QRIADNLHIK RVGDAHHAGS DSELTARVFT DLIFSISKEQ KRELEEEKQN
201: EERVRRAMHI MHESEQKRKR EEEEETEERM KRAMHIMHEA EEAFVMERRG YVTVQPRCGY LPVLHPPPRP VVFHPYPPQF AGYFCLAFIW SEIWLEMVMF
301: LPFDYWVGTV IEDGKDDLVA YRCQLSFILR VSLCQLSFCT QQTVTSLVNK RETR
101: LRRNGLNFKK IRQEGTLEAF NKTVEETLGL TFDVKKIVVD CKGVSARYGL QRIADNLHIK RVGDAHHAGS DSELTARVFT DLIFSISKEQ KRELEEEKQN
201: EERVRRAMHI MHESEQKRKR EEEEETEERM KRAMHIMHEA EEAFVMERRG YVTVQPRCGY LPVLHPPPRP VVFHPYPPQF AGYFCLAFIW SEIWLEMVMF
301: LPFDYWVGTV IEDGKDDLVA YRCQLSFILR VSLCQLSFCT QQTVTSLVNK RETR
001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
Arabidopsis Description
CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.