Factsheet for GSMUA_Achr4P30910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30930_001	Banana	cytosol	49.41	85.64
AT3G44240.1	Thale cress	cytosol	26.04	36.82
GSMUA_Achr6P19460_001	Banana	cytosol	18.34	35.84
GSMUA_Achr9P13270_001	Banana	cytosol	27.81	34.18
GSMUA_Achr3P04600_001	Banana	nucleus	24.26	33.47
GSMUA_Achr6P19450_001	Banana	cytosol	23.67	32.79
GSMUA_Achr9P22440_001	Banana	cytosol	23.96	32.14
AT1G61470.1	Thale cress	nucleus	26.33	32.01
GSMUA_Achr9P29700_001	Banana	cytosol	19.82	31.46
AT1G27890.1	Thale cress	cytosol	27.81	31.13
GSMUA_Achr4P04150_001	Banana	cytosol	24.56	30.86
GSMUA_Achr4P11450_001	Banana	cytosol	24.26	30.48
AT1G27820.1	Thale cress	cytosol	27.81	30.32
GSMUA_Achr8P18010_001	Banana	mitochondrion	23.08	30.12
GSMUA_Achr4P04220_001	Banana	nucleus	23.96	30.11
GSMUA_AchrUn_...	Banana	mitochondrion	22.49	29.57
CDY26919	Canola	cytosol	26.33	27.64
GSMUA_Achr2P05120_001	Banana	cytosol	21.01	27.63
GSMUA_Achr1P10040_001	Banana	nucleus	22.78	27.6
CDX73277	Canola	cytosol	26.33	27.55
AT1G06450.1	Thale cress	cytosol	27.81	26.11
CDY09974	Canola	cytosol, mitochondrion, nucleus	26.63	24.52
CDY06214	Canola	cytosol, mitochondrion, nucleus	26.33	24.25
Bra032421.1-P	Field mustard	cytosol, mitochondrion, nucleus	26.33	24.25
CDY09972	Canola	cytosol, mitochondrion, nucleus	26.92	24.14
CDY22569	Canola	cytosol	27.81	20.8
CDY12276	Canola	cytosol	20.71	19.77
Bra023214.1-P	Field mustard	cytosol	21.01	12.86

Protein Annotations

EnsemblPlants:GSMUA_Achr4P30910_001	EnsemblPlants:GSMUA_Achr4T30910_001	EnsemblPlantsGene:GSMUA_Achr4G30910_001	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PFAM:PF04857	SUPFAM:SSF53098	UniParc:UPI0002961435	UniProt:M0STK3	MapMan:35.1	:

Description

Putative CCR4-associated factor 1 homolog 8 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30910_001]

Coordinates

chr4:+:28290348..28291364

Molecular Weight (calculated)

38182.3 Da

IEP (calculated)

8.414

GRAVY (calculated)

-0.360

Length

338 amino acids

Sequence
(BLAST)

001: MAVTVVTENI AAQLDLLVDL RRYFRYAAID TEFSGFIRPT PPYASEEDRY ADVKYNVDRM KLIQLGITLF DENGSTPWQG CCWQFNFSDF DPLVHPSSPK
101: SLELLRRSGH DLEGNRRNGI NGDKWSNVLR NKLFDRRYGS IYVTFHGLYD VAYVIKLITG GAPLPPTLRE FIAAARRVFG ALYDIKYIAK YCDGLSGREF
201: GLTSLAQELV VEQDGNPHQA AYDSLSISRV FNEMNRRYNI GGNERFVSVL YGLENSCTES KKRYQRGTMA YLPNYVGQYG FQAHSGIPPS PMFVFLPQVG
301: PLLHQAHGVP SSPESQQQQN TLSCHGYVSG MGNVKVRR

Best Arabidopsis Sequence Match ( AT3G44240.1 )
(BLAST)

001: MSLIEDCLRS YRFIAIDTEF PSTLRETTQH ATDEERYMDM SFSVDRAKLI QLGLTLFDIN GRIGGTWEIN FSDFGVDDAR NEKSIEFLRR NGLDLRKIRE
101: EGIRIEGFFS EMFWMLKKTR RNITWVTFHG SYDIAYLLKG FTGEALPVTS ERFSKAVARV LGSVYDLKVM AGRCEGLSSR LGLETLAHEF GLNRVGTAHH
201: AGSNNELTAM VFAKVLSPFP LFLRFGSLEL RTIESEAIV

Arabidopsis Description

CAF1-8Putative CCR4-associated factor 1 homolog 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.